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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0370800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ctr copper transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0221) R2 : 0.00948
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.097 (0.0465) R2dN8 : 0.0122 R2N8 : 0.00948
σ : 0.416
deviance : 79.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.28 0.405 3.03 0.0862 0.166 0.361 -0.0836 0.366 0.117 3.77 68.65 699 -- --
74.41 0.402 3.03 0.0678 0.178 0.385 -0.0813 -- 0.115 3.68 68 669 -- --
74.29 0.401 3.03 0.0876 0.172 0.364 -- 0.377 0.117 3.63 68.39 683 -- --
74.44 0.402 3.03 0.0699 0.176 0.384 -- -- 0.12 3.65 67.87 669 -- --
75.11 0.404 3.03 0.0927 -- 0.303 -- 0.275 0.136 -- 66.15 833 -- --
77.04 0.411 3.04 0.123 0.165 -- 0.203 -- 0.11 22.7 -- -- -- --
77.19 0.411 3.04 0.114 0.164 -- -- -- 0.109 23.3 -- -- -- --
75.14 0.404 3.02 0.0757 -- 0.347 -- -- 0.165 -- 64.02 830 -- --
74.56 0.402 3.03 -- 0.177 0.393 -- -- 0.112 3.7 67 669 -- --
78.88 0.415 3.03 0.118 -- -- -- -- 0.11 -- -- -- -- --
77.53 0.412 3.04 -- 0.166 -- -- -- 0.0959 23.3 -- -- -- --
75.29 0.404 3.02 -- -- 0.359 -- -- 0.161 -- 64.29 835 -- --
79.25 0.416 3.04 -- -- -- -- -- 0.097 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.26 humidity 50.0 1440 > th dose independent rect. 9 1
2 72.60 temperature 25.0 10 > th dose independent rect. 20 1
3 72.60 wind 5.0 30 < th dose dependent rect. 20 1
4 72.65 humidity 90.0 10 < th dose independent rect. 20 1
6 72.73 temperature 25.0 30 > th dose dependent rect. 20 1
9 72.80 wind 5.0 30 < th dose independent rect. 20 1
11 72.81 temperature 25.0 30 > th dose dependent rect. 19 14
13 72.84 atmosphere 1015.0 30 < th dose independent rect. 9 23
15 72.85 atmosphere 1000.0 30 > th dose independent rect. 20 1
16 72.86 humidity 90.0 30 < th dose dependent rect. 20 1
17 72.89 temperature 10.0 30 > th dose dependent rect. 20 1
20 72.90 atmosphere 1015.0 30 < th dose dependent rect. 20 1
21 72.91 wind 1.0 30 > th dose independent rect. 20 1
23 72.91 temperature 10.0 30 > th dose independent rect. 20 1
25 72.91 temperature 30.0 30 < th dose independent rect. 20 1
26 72.91 humidity 50.0 30 > th dose independent rect. 20 1
30 72.91 atmosphere 1010.0 30 < th dose independent rect. 20 1
32 72.91 radiation 1.0 30 < th dose independent rect. 20 1
37 72.91 precipitation 0.1 30 < th dose independent rect. 20 1
38 72.91 temperature 10.0 30 > th dose independent rect. 21 23
39 72.91 radiation 1.0 30 < th dose dependent rect. 20 1
44 72.91 precipitation 0.1 30 < th dose dependent rect. 20 1
47 72.96 atmosphere 995.0 30 > th dose dependent rect. 20 1
49 72.98 humidity 50.0 30 > th dose dependent rect. 20 1
50 72.98 radiation 20.0 1440 < th dose dependent rect. 21 1
54 73.00 temperature 10.0 1440 > th dose independent rect. 21 1
57 73.00 temperature 30.0 1440 < th dose independent rect. 21 1
61 73.00 humidity 50.0 1440 > th dose independent rect. 21 1
67 73.00 atmosphere 995.0 1440 > th dose independent rect. 21 1
68 73.00 radiation 1.0 1440 < th dose independent rect. 21 1
88 73.00 temperature 10.0 1440 > th dose independent rect. 22 23
108 73.21 temperature 30.0 30 < th dose dependent rect. 20 1
109 73.23 temperature 25.0 30 > th dose independent rect. 19 5
110 73.27 wind 1.0 30 > th dose dependent rect. 20 1
113 73.28 radiation 40.0 14400 < th dose dependent rect. 21 1
115 73.30 wind 9.0 1440 < th dose independent rect. 21 1
134 73.33 humidity 60.0 1440 < th dose independent rect. 18 16
135 73.33 wind 9.0 30 < th dose independent rect. 21 23
150 73.43 humidity 60.0 1440 < th dose dependent rect. 18 16
151 73.44 temperature 10.0 1440 > th dose independent rect. 9 1
154 73.44 atmosphere 995.0 1440 > th dose independent rect. 9 1
157 73.44 atmosphere 1015.0 1440 < th dose independent rect. 9 1
158 73.44 temperature 10.0 1440 > th dose independent rect. 10 23
161 73.44 temperature 25.0 30 > th dose dependent rect. 8 1
162 73.45 temperature 25.0 30 > th dose independent rect. 8 1
164 73.45 atmosphere 1005.0 30 > th dose dependent rect. 8 1
165 73.46 humidity 80.0 30 < th dose independent rect. 8 1
166 73.46 atmosphere 1005.0 30 > th dose independent rect. 8 1
168 73.47 radiation 10.0 30 > th dose independent rect. 8 1
170 73.47 humidity 80.0 30 < th dose dependent rect. 8 1
174 73.48 precipitation 0.1 30 < th dose independent rect. 9 23
179 73.48 radiation 1.0 30 > th dose dependent rect. 8 1
182 73.48 precipitation 0.1 30 < th dose dependent rect. 9 23
183 73.49 wind 1.0 30 > th dose independent rect. 8 1
184 73.49 wind 5.0 30 < th dose independent rect. 8 1
189 73.50 temperature 10.0 30 > th dose independent rect. 8 1
192 73.50 temperature 30.0 30 < th dose independent rect. 8 1
193 73.50 humidity 50.0 30 > th dose independent rect. 8 1
197 73.50 atmosphere 995.0 30 > th dose independent rect. 8 1
199 73.50 atmosphere 1010.0 30 < th dose independent rect. 8 1
202 73.50 radiation 40.0 30 < th dose independent rect. 8 1
203 73.50 precipitation 0.1 30 < th dose independent rect. 8 1
204 73.50 temperature 10.0 30 > th dose independent rect. 9 23
205 73.50 wind 1.0 30 > th dose dependent rect. 8 1
206 73.50 precipitation 0.1 30 < th dose dependent rect. 8 1
210 73.51 wind 5.0 30 < th dose dependent rect. 8 1
216 73.53 wind 5.0 10 < th dose independent rect. 19 17
217 73.53 humidity 50.0 30 > th dose dependent rect. 8 1
218 73.53 radiation 40.0 30 < th dose dependent rect. 8 1
220 73.54 humidity 60.0 1440 > th dose independent rect. 18 16
229 73.58 atmosphere 1015.0 270 < th dose independent rect. 21 10
231 73.58 atmosphere 1015.0 30 < th dose dependent rect. 8 1
251 73.65 atmosphere 995.0 30 > th dose independent rect. 9 23
253 73.65 temperature 30.0 30 < th dose dependent rect. 8 1
275 73.68 temperature 25.0 90 > th dose dependent rect. 19 5
277 73.72 atmosphere 1015.0 270 < th dose independent rect. 21 20
279 73.73 humidity 60.0 720 > th dose independent sin 10 NA
292 73.82 humidity 50.0 10 < th dose independent rect. 11 1
382 73.82 humidity 50.0 1440 > th dose independent rect. 17 19
385 73.82 humidity 50.0 10 < th dose dependent rect. 11 1
401 73.82 temperature 15.0 270 > th dose dependent rect. 17 4
477 73.82 humidity 60.0 1440 < th dose dependent rect. 17 19
483 73.83 humidity 60.0 720 < th dose dependent sin 9 NA
484 73.83 humidity 70.0 270 < th dose dependent rect. 19 13
485 73.84 temperature 30.0 10 < th dose independent rect. 19 17
486 73.84 wind 9.0 30 < th dose independent rect. 9 23
489 73.86 humidity 60.0 720 < th dose independent sin 9 NA
492 73.88 humidity 50.0 1440 < th dose independent rect. 17 19
494 73.88 temperature 15.0 10 > th dose dependent rect. 19 5
498 73.90 humidity 50.0 1440 > th dose independent rect. 21 13
504 73.92 humidity 90.0 270 < th dose independent rect. 17 4
509 73.95 temperature 20.0 270 > th dose independent rect. 17 4
510 73.95 temperature 20.0 270 > th dose independent rect. 5 16
520 73.98 radiation 10.0 4320 < th dose dependent rect. 9 3
522 73.99 humidity 90.0 270 < th dose dependent rect. 17 4
523 73.99 humidity 70.0 270 < th dose dependent rect. 18 15
534 74.02 atmosphere 1015.0 90 < th dose independent rect. 21 22
537 74.03 humidity 90.0 90 < th dose independent rect. 19 4
560 74.10 wind 7.0 43200 < th dose independent rect. 12 2
565 74.11 humidity 60.0 1440 > th dose independent rect. 24 9
576 74.14 atmosphere 1010.0 270 < th dose independent rect. 9 8
577 74.14 temperature 20.0 270 > th dose independent rect. 7 14
582 74.15 humidity 50.0 270 > th dose independent rect. 11 6
584 74.15 humidity 50.0 270 > th dose independent rect. 21 20
593 74.16 humidity 70.0 720 < th dose independent rect. 11 22
596 74.16 radiation 10.0 270 < th dose dependent rect. 21 11
599 74.18 humidity 60.0 1440 > th dose independent rect. 4 5
603 74.19 wind 7.0 43200 > th dose independent rect. 12 2
604 74.19 atmosphere 1010.0 270 < th dose independent rect. 11 5
608 74.19 temperature 20.0 30 > th dose independent rect. 19 17
611 74.19 radiation 10.0 270 < th dose dependent rect. 21 16
614 74.20 wind 5.0 10 < th dose independent rect. 19 5
623 74.21 atmosphere 1010.0 10 < th dose independent rect. 12 7
632 74.22 humidity 70.0 720 > th dose independent rect. 11 21
642 74.23 atmosphere 1015.0 10 < th dose independent rect. 22 10
643 74.23 humidity 70.0 270 < th dose independent rect. 19 13
651 74.23 wind 9.0 10 < th dose dependent rect. 19 17
657 74.24 precipitation 0.1 30 < th dose independent rect. 19 17
660 74.24 humidity 90.0 270 < th dose dependent rect. 19 1
664 74.24 temperature 10.0 10 > th dose dependent rect. 19 17
665 74.24 humidity 90.0 10 < th dose dependent rect. 19 17
666 74.24 precipitation 0.1 30 < th dose dependent rect. 19 17
670 74.25 radiation 10.0 270 < th dose independent rect. 21 11
679 74.26 humidity 70.0 720 < th dose independent rect. 14 19
683 74.27 humidity 80.0 14400 < th dose dependent rect. 6 2
684 74.27 humidity 60.0 1440 < th dose dependent rect. 8 2
713 74.29 precipitation 0.1 270 < th dose independent rect. 7 14
720 74.29 precipitation 0.1 270 < th dose dependent rect. 7 14
721 74.29 atmosphere 995.0 10 > th dose dependent rect. 19 17
739 74.31 wind 5.0 270 < th dose independent rect. 19 1
742 74.31 wind 9.0 10 < th dose independent rect. 12 7
743 74.31 precipitation 0.1 10 < th dose independent rect. 12 7
744 74.31 wind 5.0 10 < th dose independent rect. 8 16
752 74.31 precipitation 0.1 10 < th dose dependent rect. 12 7
753 74.31 humidity 90.0 270 < th dose dependent rect. 17 16
759 74.32 temperature 10.0 10 > th dose independent rect. 12 7
763 74.32 atmosphere 995.0 10 > th dose independent rect. 19 17
774 74.33 humidity 80.0 14400 < th dose independent rect. 7 1
778 74.33 humidity 50.0 10 > th dose independent rect. 24 19
782 74.34 humidity 60.0 1440 < th dose independent rect. 8 1
794 74.34 humidity 70.0 720 < th dose independent rect. 11 9
826 74.34 temperature 10.0 10 > th dose dependent rect. 12 7
848 74.35 temperature 10.0 270 > th dose dependent rect. 17 16
851 74.36 radiation 10.0 4320 < th dose independent rect. 9 2
856 74.36 temperature 25.0 30 > th dose independent rect. 12 7
861 74.36 atmosphere 1015.0 270 < th dose independent rect. 12 14
870 74.37 humidity 70.0 720 < th dose independent sin 18 NA
885 74.38 humidity 50.0 10 > th dose independent rect. 24 17
907 74.39 humidity 60.0 720 > th dose independent rect. 17 22
908 74.39 humidity 70.0 720 < th dose independent rect. 18 23
915 74.40 wind 1.0 14400 < th dose independent rect. 20 1
943 74.40 humidity 70.0 720 < th dose dependent sin 4 NA
946 74.40 humidity 60.0 720 < th dose dependent rect. 8 5
963 74.41 precipitation 0.1 270 < th dose independent rect. 17 4
967 74.41 humidity 70.0 720 < th dose independent rect. 13 23
968 74.41 humidity 70.0 720 < th dose independent rect. 15 23
972 74.41 precipitation 0.1 270 < th dose dependent rect. 17 4
978 74.42 humidity 70.0 720 < th dose independent no NA NA
982 74.42 humidity 70.0 720 < th dose independent rect. 6 14
988 74.42 humidity 70.0 720 > th dose independent rect. 15 17