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Os03g0370000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pyruvate dehydrogenase kinase isoform 1 (EC 2.7.1.99).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0174) R2 : 0.115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.282 (0.0367) R2dN8 : 0.148 R2N8 : 0.115
σ : 0.329
deviance : 49.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.05 0.249 12.6 -0.502 0.271 -0.487 -0.733 0.177 -0.285 3.51 5.898 473 -- --
28.07 0.247 12.6 -0.535 0.276 -0.475 -0.742 -- -0.293 3.55 6.569 486 -- --
28.76 0.252 12.6 -0.387 0.327 -0.397 -- 1.22 -0.261 5.77 5.898 473 -- --
29.49 0.253 12.6 -0.519 0.422 -0.354 -- -- -0.296 4.6 9.641 1157 -- --
31.32 0.261 12.6 -0.276 -- -0.619 -- 1.5 -0.213 -- 23.1 259 -- --
30.63 0.259 12.6 -0.633 0.391 -- -0.595 -- -0.364 4.46 -- -- -- --
31.43 0.263 12.6 -0.628 0.395 -- -- -- -0.361 4.95 -- -- -- --
32.45 0.265 12.6 -0.522 -- -0.504 -- -- -0.288 -- 23.4 277 -- --
32.47 0.265 12.5 -- 0.399 -0.492 -- -- -0.144 4.87 -0.5157 47520 -- --
39.63 0.294 12.6 -0.613 -- -- -- -- -0.35 -- -- -- -- --
41.82 0.303 12.6 -- 0.383 -- -- -- -0.291 5 -- -- -- --
38.13 0.288 12.6 -- -- -0.843 -- -- -0.186 -- 11.33 324 -- --
49.56 0.329 12.6 -- -- -- -- -- -0.282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.47 temperature 10.0 270 > th dose dependent rect. 2 16
5 25.72 temperature 15.0 30 > th dose dependent rect. 4 17
51 26.22 temperature 10.0 90 > th dose dependent rect. 12 9
63 26.33 temperature 10.0 270 > th dose dependent rect. 10 8
76 26.39 atmosphere 1015.0 90 < th dose dependent rect. 12 9
85 26.42 temperature 10.0 10 > th dose dependent rect. 12 10
88 26.43 precipitation 0.1 90 < th dose independent rect. 12 9
89 26.43 precipitation 0.1 90 < th dose dependent rect. 12 9
109 26.49 atmosphere 1015.0 10 < th dose dependent rect. 12 10
123 26.54 temperature 30.0 270 < th dose dependent rect. 5 7
128 26.55 precipitation 0.1 270 < th dose independent rect. 12 17
132 26.55 precipitation 0.1 270 < th dose dependent rect. 12 17
156 26.61 atmosphere 1010.0 270 < th dose independent rect. 11 7
161 26.62 temperature 10.0 270 > th dose dependent sin 0 NA
173 26.65 temperature 30.0 270 < th dose dependent rect. 7 3
193 26.70 atmosphere 1010.0 90 < th dose independent rect. 12 9
202 26.71 temperature 10.0 90 > th dose independent rect. 12 9
205 26.71 temperature 10.0 90 > th dose independent rect. 21 15
206 26.71 atmosphere 995.0 90 > th dose independent rect. 21 15
214 26.72 humidity 50.0 90 > th dose independent rect. 21 15
220 26.73 wind 9.0 270 < th dose dependent rect. 24 16
225 26.75 precipitation 0.1 270 < th dose independent rect. 12 6
228 26.75 precipitation 0.1 270 < th dose dependent rect. 12 6
235 26.76 temperature 15.0 270 > th dose independent rect. 1 16
246 26.78 temperature 15.0 270 > th dose independent rect. 11 7
254 26.80 wind 9.0 90 < th dose independent rect. 12 9
259 26.81 humidity 60.0 270 > th dose independent rect. 18 18
287 26.85 wind 1.0 30 > th dose dependent rect. 22 14
293 26.86 temperature 10.0 270 > th dose independent rect. 18 18
302 26.87 radiation 40.0 90 < th dose independent rect. 12 9
307 26.87 temperature 10.0 270 > th dose dependent rect. 10 22
310 26.88 precipitation 0.1 90 < th dose independent rect. 21 15
311 26.88 atmosphere 995.0 270 > th dose independent rect. 18 18
314 26.88 precipitation 0.1 90 < th dose dependent rect. 21 15
319 26.89 temperature 10.0 43200 > th dose independent rect. 8 8
320 26.89 wind 1.0 90 > th dose independent rect. 12 9
341 26.92 wind 9.0 270 < th dose independent rect. 11 7
342 26.92 temperature 10.0 270 > th dose independent rect. 5 7
343 26.92 atmosphere 995.0 270 > th dose independent rect. 5 7
344 26.92 atmosphere 1015.0 270 < th dose independent rect. 5 7
345 26.92 atmosphere 1015.0 90 < th dose independent rect. 21 15
346 26.92 temperature 10.0 270 > th dose independent rect. 12 17
352 26.93 humidity 50.0 270 > th dose independent rect. 5 7
356 26.93 temperature 30.0 270 < th dose independent rect. 18 18
361 26.93 radiation 1.0 270 < th dose dependent rect. 5 20
364 26.94 wind 7.0 270 < th dose independent rect. 1 15
371 26.95 humidity 90.0 270 < th dose independent rect. 11 7
379 26.96 precipitation 0.1 270 < th dose independent rect. 5 7
382 26.96 radiation 1.0 270 < th dose independent rect. 5 20
383 26.96 precipitation 0.1 270 < th dose dependent rect. 5 7
385 26.97 humidity 90.0 10 < th dose independent rect. 12 10
398 26.98 temperature 15.0 1440 > th dose independent rect. 8 8
410 26.99 atmosphere 1010.0 10 < th dose independent rect. 12 10
411 26.99 wind 9.0 90 < th dose independent rect. 21 15
413 26.99 wind 9.0 270 < th dose independent rect. 12 17
414 26.99 wind 9.0 270 < th dose independent rect. 18 17
415 26.99 temperature 10.0 720 > th dose dependent rect. 4 7
420 27.00 wind 1.0 270 > th dose independent rect. 12 6
421 27.00 atmosphere 995.0 90 > th dose independent rect. 12 9
434 27.01 temperature 30.0 270 < th dose independent rect. 16 9
443 27.01 temperature 10.0 720 > th dose dependent rect. 2 9
464 27.03 radiation 1.0 270 > th dose independent rect. 10 21
491 27.06 wind 9.0 270 < th dose independent rect. 5 7
509 27.07 precipitation 0.1 270 < th dose independent rect. 10 23
522 27.07 precipitation 0.1 270 < th dose dependent rect. 10 23
523 27.08 temperature 10.0 43200 > th dose independent rect. 8 6
524 27.08 atmosphere 995.0 270 > th dose independent rect. 12 6
531 27.08 wind 9.0 270 < th dose dependent rect. 11 7
540 27.09 wind 5.0 270 < th dose independent rect. 23 8
541 27.09 temperature 10.0 10 > th dose independent rect. 12 10
544 27.09 temperature 10.0 10 > th dose independent rect. 22 14
545 27.09 atmosphere 995.0 10 > th dose independent rect. 22 14
546 27.09 precipitation 0.1 90 < th dose independent rect. 15 16
550 27.09 precipitation 0.1 90 < th dose dependent rect. 15 16
553 27.10 humidity 50.0 10 > th dose independent rect. 22 14
563 27.10 wind 9.0 270 < th dose dependent rect. 12 19
569 27.11 radiation 1.0 270 > th dose independent rect. 12 7
573 27.11 humidity 70.0 270 > th dose independent rect. 16 9
585 27.11 temperature 10.0 720 > th dose dependent sin 4 NA
596 27.11 temperature 10.0 270 > th dose dependent rect. 12 17
600 27.12 atmosphere 1000.0 14400 > th dose independent rect. 13 1
609 27.12 radiation 40.0 270 < th dose independent rect. 12 17
651 27.14 temperature 30.0 90 < th dose independent rect. 21 15
653 27.14 atmosphere 1015.0 270 < th dose independent rect. 18 18
667 27.15 wind 1.0 10 > th dose independent rect. 12 10
692 27.16 atmosphere 1000.0 14400 < th dose independent rect. 13 1
695 27.16 radiation 1.0 270 < th dose independent rect. 16 9
696 27.16 precipitation 0.1 270 < th dose independent rect. 1 16
700 27.16 humidity 50.0 270 > th dose dependent rect. 16 9
702 27.16 radiation 1.0 270 < th dose dependent rect. 16 9
708 27.16 precipitation 0.1 270 < th dose dependent rect. 1 16
712 27.17 wind 1.0 270 > th dose independent rect. 5 7
715 27.17 wind 9.0 10 < th dose independent rect. 12 10
742 27.18 temperature 10.0 720 > th dose dependent rect. 23 12
753 27.19 radiation 40.0 270 < th dose independent rect. 18 17
770 27.20 temperature 10.0 1440 > th dose independent rect. 13 10
773 27.20 temperature 10.0 1440 > th dose independent rect. 23 14
776 27.20 atmosphere 995.0 1440 > th dose independent rect. 23 14
781 27.20 precipitation 0.1 270 < th dose independent rect. 18 18
784 27.20 wind 1.0 30 > th dose dependent rect. 7 5
791 27.20 precipitation 0.1 270 < th dose dependent rect. 18 18
795 27.21 temperature 15.0 1440 > th dose independent rect. 10 6
803 27.21 wind 1.0 270 > th dose independent rect. 12 17
804 27.21 atmosphere 995.0 270 > th dose independent rect. 12 17
831 27.22 humidity 90.0 10 < th dose independent rect. 3 18
851 27.23 atmosphere 1015.0 10 < th dose independent rect. 22 14
862 27.23 radiation 30.0 270 < th dose dependent rect. 16 9
863 27.23 temperature 10.0 720 > th dose dependent rect. 4 10
871 27.23 humidity 50.0 270 > th dose dependent rect. 18 18
874 27.24 temperature 30.0 270 < th dose independent rect. 5 7
891 27.24 temperature 15.0 270 > th dose independent rect. 10 21
911 27.25 temperature 30.0 270 < th dose independent rect. 7 16
922 27.25 temperature 30.0 720 < th dose dependent rect. 24 10
931 27.26 humidity 50.0 270 > th dose independent rect. 16 9
949 27.27 radiation 1.0 270 > th dose independent sin 18 NA
982 27.27 wind 9.0 90 < th dose dependent rect. 3 14