FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0369700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.0344) R2 : 0.859
β1 : 2.42 (0.128) R2dD : 0.117 R2D : 0.124
β2 : 3.91 (0.0915) R2dC : 0.597 R2C : 0.658
β3 : 1.58 (0.114) R2dE : 0.0616 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.296 (0.0739) R2dN8 : 0.00514 R2N8 : -0.00853
σ : 0.643
deviance : 190.47
__
_____
C
peak time of C : 18.5
E
wheather : wind
threshold : 7
memory length : 312
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.8
open length of G : 21.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.72 0.63 5.21 2.46 3.91 1.75 0.573 2.12 0.274 18.5 6.978 294 8.65 22
188.66 0.64 5.22 2.47 3.91 1.73 0.816 -- 0.271 18.4 7.148 309 8.62 22
180.36 0.625 5.21 2.48 3.93 1.78 -- 2.36 0.275 18.5 6.9 293 8.58 22
190.47 0.643 5.23 2.42 3.91 1.58 -- -- 0.296 18.5 7 312 8.8 21.6
231.05 0.708 5.03 2.82 -- 3.78 -- 1.86 0.566 -- 20.57 292 10.7 11.9
220.36 0.696 5.23 2.69 4.22 -- 1.8 -- 0.352 19.2 -- -- -- --
228.97 0.709 5.23 2.65 4.23 -- -- -- 0.357 19.2 -- -- -- --
227.51 0.703 5.13 2.66 -- 3.51 -- -- 0.306 -- 17.48 273 10.8 11.9
329.54 0.845 5.27 -- 4.27 2.17 -- -- 0.0478 18.4 5.603 318 8.8 21.4
1175.53 1.6 5.13 2.57 -- -- -- -- 0.283 -- -- -- -- --
414.02 0.952 5.3 -- 4.2 -- -- -- 0.0618 19.2 -- -- -- --
414.6 0.948 5.19 -- -- 3.51 -- -- 0.0484 -- 22.38 274 10.8 11.8
1350.05 1.72 5.2 -- -- -- -- -- -0.00208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.32 temperature 30.0 90 < th dose dependent rect. 23 8
2 181.93 wind 7.0 270 < th dose independent rect. 9 22
12 187.03 wind 9.0 270 < th dose dependent rect. 10 7
13 187.32 wind 7.0 270 < th dose independent rect. 1 14
14 187.33 atmosphere 1010.0 270 < th dose independent rect. 15 10
15 187.37 wind 7.0 270 < th dose independent rect. 10 7
22 188.66 wind 7.0 10 < th dose independent rect. 12 19
34 189.39 temperature 15.0 1440 > th dose independent rect. 8 5
38 189.82 radiation 40.0 270 < th dose independent rect. 6 15
39 189.86 wind 9.0 270 < th dose dependent rect. 11 4
44 190.50 temperature 15.0 270 > th dose dependent rect. 10 6
50 190.72 humidity 60.0 30 > th dose independent rect. 7 5
51 190.74 humidity 70.0 270 > th dose independent rect. 6 4
52 190.76 atmosphere 995.0 270 > th dose dependent rect. 21 9
60 191.12 temperature 25.0 270 > th dose dependent rect. 11 3
70 191.33 temperature 15.0 270 > th dose independent rect. 15 10
79 191.46 radiation 40.0 270 < th dose independent rect. 6 4
82 191.51 temperature 20.0 30 > th dose independent rect. 16 20
86 191.70 temperature 20.0 10 > th dose independent rect. 20 16
89 191.72 wind 1.0 10 > th dose independent rect. 7 5
93 191.77 radiation 40.0 270 < th dose independent rect. 5 6
116 192.14 temperature 30.0 270 < th dose independent rect. 5 6
123 192.35 precipitation 0.1 10 < th dose independent rect. 12 19
125 192.35 precipitation 0.1 10 < th dose dependent rect. 12 19
127 192.37 temperature 10.0 270 > th dose dependent rect. 18 16
128 192.38 temperature 10.0 10 > th dose independent rect. 7 5
130 192.38 atmosphere 995.0 10 > th dose independent rect. 7 5
131 192.38 atmosphere 1015.0 10 < th dose independent rect. 7 5
132 192.38 temperature 10.0 10 > th dose independent rect. 12 19
140 192.45 humidity 50.0 270 > th dose dependent rect. 7 2
142 192.51 precipitation 0.1 10 < th dose independent rect. 7 5
143 192.51 humidity 50.0 270 > th dose dependent rect. 6 4
144 192.51 precipitation 0.1 10 < th dose dependent rect. 7 5
152 192.64 temperature 30.0 270 < th dose independent rect. 6 4
153 192.64 temperature 30.0 270 < th dose dependent rect. 6 13
155 192.69 temperature 15.0 270 > th dose independent rect. 17 17
175 192.87 radiation 30.0 270 < th dose independent rect. 7 2
182 193.01 radiation 40.0 270 < th dose dependent rect. 7 2
185 193.09 wind 9.0 270 < th dose dependent rect. 10 20
190 193.11 atmosphere 995.0 1440 > th dose independent rect. 8 5
191 193.11 temperature 10.0 1440 > th dose independent rect. 13 19
209 193.36 atmosphere 1000.0 270 > th dose independent rect. 21 9
211 193.37 wind 9.0 10 < th dose independent rect. 7 5
219 193.44 temperature 25.0 90 < th dose independent rect. 23 8
235 193.64 atmosphere 1015.0 270 < th dose independent rect. 6 15
241 193.72 atmosphere 1000.0 90 > th dose independent rect. 23 8
254 193.89 atmosphere 995.0 10 > th dose dependent rect. 23 8
257 193.94 temperature 15.0 270 > th dose independent rect. 8 23
263 194.02 temperature 30.0 10 < th dose independent rect. 7 5
274 194.11 temperature 30.0 270 < th dose independent rect. 7 2
287 194.19 temperature 30.0 270 < th dose independent rect. 5 15
289 194.20 atmosphere 1015.0 270 < th dose independent rect. 17 17
319 194.36 radiation 1.0 10 > th dose independent rect. 7 5
320 194.36 precipitation 0.1 270 < th dose independent rect. 10 20
321 194.36 precipitation 0.1 270 < th dose dependent rect. 10 20
325 194.43 wind 9.0 270 < th dose independent rect. 7 2
326 194.43 temperature 10.0 270 > th dose independent rect. 7 2
329 194.43 atmosphere 995.0 270 > th dose independent rect. 7 2
330 194.43 atmosphere 1015.0 270 < th dose independent rect. 7 2
333 194.44 temperature 25.0 270 > th dose independent rect. 10 6
345 194.52 precipitation 0.1 270 < th dose independent rect. 7 2
346 194.52 precipitation 0.1 270 < th dose dependent rect. 7 2
348 194.54 temperature 30.0 270 < th dose independent rect. 15 20
357 194.60 humidity 90.0 10 < th dose independent rect. 7 5
360 194.61 wind 1.0 30 > th dose independent rect. 12 19
364 194.63 wind 7.0 270 < th dose independent rect. 21 9
377 194.74 humidity 70.0 270 > th dose independent rect. 17 17
385 194.77 temperature 10.0 270 > th dose independent rect. 10 20
388 194.79 wind 9.0 270 < th dose independent rect. 6 4
389 194.79 precipitation 0.1 270 < th dose independent rect. 9 22
391 194.79 precipitation 0.1 270 < th dose dependent rect. 9 22
410 194.89 temperature 25.0 270 > th dose independent rect. 11 4
417 194.93 wind 7.0 10 < th dose independent rect. 12 6
421 194.96 temperature 15.0 10 > th dose dependent rect. 12 8
422 194.97 humidity 70.0 270 > th dose independent rect. 6 14
432 195.03 temperature 15.0 270 > th dose independent rect. 6 15
433 195.03 temperature 25.0 10 > th dose dependent rect. 12 4
465 195.16 temperature 25.0 10 > th dose dependent rect. 12 9
470 195.20 wind 7.0 720 < th dose independent rect. 3 11
475 195.23 wind 9.0 90 < th dose dependent rect. 12 19
483 195.28 temperature 25.0 10 > th dose dependent rect. 12 6
490 195.31 temperature 10.0 10 > th dose dependent rect. 20 16
495 195.34 atmosphere 1015.0 90 < th dose dependent rect. 12 5
497 195.35 radiation 40.0 270 < th dose independent rect. 4 22
539 195.52 temperature 30.0 270 < th dose independent rect. 17 17
555 195.61 precipitation 0.1 270 < th dose independent rect. 21 9
557 195.61 precipitation 0.1 270 < th dose dependent rect. 21 9
560 195.63 temperature 10.0 270 > th dose independent rect. 21 9
561 195.63 temperature 30.0 270 < th dose independent rect. 21 9
562 195.63 humidity 50.0 270 > th dose independent rect. 21 9
566 195.63 radiation 20.0 270 < th dose independent rect. 21 9
586 195.68 radiation 40.0 270 < th dose dependent rect. 21 9
588 195.69 radiation 40.0 270 < th dose independent rect. 17 17
593 195.74 atmosphere 1015.0 270 < th dose independent rect. 15 20
596 195.76 wind 7.0 270 < th dose independent rect. 10 11
613 195.82 radiation 1.0 90 > th dose dependent rect. 12 18
622 195.87 atmosphere 1015.0 270 < th dose dependent rect. 12 2
623 195.88 atmosphere 1000.0 10 > th dose independent rect. 23 8
633 195.93 temperature 10.0 270 > th dose dependent rect. 16 9
644 195.99 radiation 1.0 270 < th dose independent rect. 21 9
668 196.08 temperature 20.0 10 > th dose independent rect. 24 12
702 196.18 radiation 1.0 270 < th dose dependent sin 9 NA
708 196.20 atmosphere 1015.0 10 < th dose dependent rect. 12 6
725 196.23 radiation 40.0 270 < th dose independent rect. 16 19
755 196.34 radiation 1.0 90 > th dose dependent rect. 12 7
763 196.34 temperature 30.0 10 < th dose dependent rect. 7 15
836 196.57 wind 7.0 10 < th dose independent rect. 12 8
841 196.58 radiation 1.0 270 > th dose dependent rect. 12 1
851 196.62 atmosphere 995.0 10 > th dose independent rect. 12 19
856 196.65 radiation 10.0 270 > th dose independent rect. 12 2
865 196.69 radiation 1.0 270 < th dose independent sin 9 NA
869 196.70 temperature 10.0 270 > th dose independent rect. 1 14
870 196.70 atmosphere 1015.0 270 < th dose independent rect. 1 14
894 196.79 radiation 1.0 270 > th dose independent rect. 7 2
905 196.82 precipitation 0.1 270 < th dose independent rect. 1 14
907 196.82 precipitation 0.1 270 < th dose dependent rect. 1 14
918 196.86 atmosphere 1010.0 270 < th dose independent rect. 11 4
929 196.88 atmosphere 1015.0 10 < th dose dependent rect. 12 8
953 196.96 radiation 40.0 270 < th dose independent rect. 15 10
957 197.00 atmosphere 1015.0 270 < th dose dependent rect. 16 9
963 197.02 wind 9.0 720 < th dose dependent rect. 3 11
986 197.11 radiation 1.0 270 > th dose independent sin 9 NA
989 197.11 humidity 50.0 10 > th dose independent rect. 12 19