Os03g0369400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os03g0369400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.76 | 0.68 | 7.23 | 0.717 | 1.91 | 2.88 | 0.201 | -5.09 | -0.515 | 19.5 | 49.99 | 321 | -- | -- |
| 213.25 | 0.68 | 7.21 | 0.833 | 1.95 | 1.81 | 0.204 | -- | -0.525 | 19.5 | 49.39 | 291 | -- | -- |
| 209.86 | 0.675 | 7.23 | 0.71 | 1.9 | 2.9 | -- | -5.07 | -0.515 | 19.5 | 49.85 | 320 | -- | -- |
| 213.36 | 0.68 | 7.21 | 0.826 | 1.94 | 1.84 | -- | -- | -0.524 | 19.5 | 49.47 | 294 | -- | -- |
| 378.95 | 0.907 | 7.17 | 0.512 | -- | 2.85 | -- | -4.64 | -0.42 | -- | 53 | 443 | -- | -- |
| 229.14 | 0.71 | 7.22 | 0.99 | 2.14 | -- | 0.724 | -- | -0.572 | 19.3 | -- | -- | -- | -- |
| 230.55 | 0.711 | 7.22 | 0.974 | 2.14 | -- | -- | -- | -0.57 | 19.3 | -- | -- | -- | -- |
| 290.88 | 0.794 | 7.19 | 0.766 | -- | 2.03 | -- | -- | -0.671 | -- | 75.9 | 624 | -- | -- |
| 230.51 | 0.707 | 7.22 | -- | 1.89 | 1.95 | -- | -- | -0.6 | 19.5 | 50.44 | 325 | -- | -- |
| 473.13 | 1.02 | 7.17 | 0.938 | -- | -- | -- | -- | -0.606 | -- | -- | -- | -- | -- |
| 255.54 | 0.748 | 7.25 | -- | 2.13 | -- | -- | -- | -0.679 | 19.4 | -- | -- | -- | -- |
| 306.22 | 0.815 | 7.21 | -- | -- | 2.08 | -- | -- | -0.754 | -- | 75.58 | 633 | -- | -- |
| 496.32 | 1.04 | 7.2 | -- | -- | -- | -- | -- | -0.71 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.41 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 2 | 196.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 4 | 196.93 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 13 | 199.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 29 | 200.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 39 | 201.38 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 42 | 201.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 46 | 201.64 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 55 | 202.07 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 15 |
| 67 | 202.45 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 70 | 202.49 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 73 | 202.50 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 16 | 6 |
| 102 | 203.25 | humidity | 80.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 104 | 203.27 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 137 | 203.92 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 180 | 204.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 183 | 204.62 | humidity | 70.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 184 | 204.62 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 209 | 204.85 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 216 | 204.96 | temperature | 15.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 231 | 205.10 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 246 | 205.28 | temperature | 15.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 261 | 205.48 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 267 | 205.52 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 269 | 205.52 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 288 | 205.67 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 5 |
| 289 | 205.68 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 302 | 205.76 | humidity | 90.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 317 | 205.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 326 | 205.94 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 9 |
| 351 | 206.08 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 387 | 206.32 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 408 | 206.47 | radiation | 20.0 | 30 | < th | dose independent | rect. | 14 | 7 |
| 413 | 206.49 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 423 | 206.54 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 445 | 206.64 | humidity | 80.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 453 | 206.68 | wind | 7.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 461 | 206.71 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 6 |
| 467 | 206.73 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 471 | 206.73 | radiation | 30.0 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 474 | 206.75 | radiation | 40.0 | 720 | > th | dose independent | rect. | 13 | 22 |
| 507 | 206.94 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 6 |
| 511 | 206.94 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 530 | 207.01 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 589 | 207.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 612 | 207.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 632 | 207.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 651 | 207.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 15 | 6 |
| 690 | 207.65 | radiation | 30.0 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 712 | 207.75 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 6 |
| 714 | 207.75 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 735 | 207.81 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 746 | 207.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 754 | 207.92 | humidity | 50.0 | 30 | > th | dose dependent | sin | 13 | NA |
| 774 | 207.97 | radiation | 1.0 | 270 | > th | dose independent | sin | 14 | NA |
| 827 | 208.14 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 18 |
| 833 | 208.17 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 18 |
| 836 | 208.18 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 845 | 208.23 | radiation | 40.0 | 720 | > th | dose independent | rect. | 13 | 2 |
| 880 | 208.33 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 883 | 208.34 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 885 | 208.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 895 | 208.40 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 913 | 208.46 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 935 | 208.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 10 | 14 |
| 938 | 208.48 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 9 |
| 957 | 208.53 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 970 | 208.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 982 | 208.64 | radiation | 40.0 | 720 | > th | dose independent | sin | 12 | NA |
| 984 | 208.64 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 14 |