FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0369200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0283) R2 : 0.00569
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0962 (0.0596) R2dN8 : 0.00734 R2N8 : 0.00569
σ : 0.533
deviance : 130.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.51 0.522 3.28 -0.337 0.182 -0.375 -0.173 1.96 0.0561 18.3 1.05 11 -- --
126.85 0.529 3.26 -0.263 0.108 -0.2 0.494 -- 0.0721 15.3 1 12 -- --
122.96 0.52 3.28 -0.351 0.175 -0.358 -- 1.93 0.0553 17.8 1.05 11 -- --
126.99 0.525 3.26 -0.26 0.162 -0.246 -- -- 0.0755 17.8 1.08 12 -- --
124.37 0.522 3.27 -0.345 -- -0.282 -- 1.86 0.0514 -- 1.021 11 -- --
127.78 0.53 3.26 -0.255 0.0414 -- -0.49 -- 0.0682 23 -- -- -- --
128.36 0.531 3.26 -0.232 0.103 -- -- -- 0.0722 18.9 -- -- -- --
128.17 0.527 3.26 -0.255 -- -0.167 -- -- 0.0713 -- 1.069 12 -- --
128.73 0.528 3.25 -- 0.157 -0.215 -- -- 0.103 17.8 1.015 11 -- --
128.92 0.531 3.26 -0.234 -- -- -- -- 0.0702 -- -- -- -- --
129.78 0.533 3.25 -- 0.106 -- -- -- 0.098 18.7 -- -- -- --
129.84 0.532 3.25 -- -- -0.119 -- -- 0.0989 -- 1.069 12 -- --
130.36 0.533 3.25 -- -- -- -- -- 0.0962 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.57 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 114.62 temperature 25.0 30 < th dose independent rect. 2 1
4 114.69 wind 3.0 30 < th dose independent rect. 2 1
5 114.69 atmosphere 995.0 30 > th dose dependent rect. 2 1
7 114.75 wind 9.0 30 < th dose independent rect. 2 1
8 114.75 temperature 10.0 30 > th dose independent rect. 2 1
11 114.75 humidity 50.0 30 > th dose independent rect. 2 1
15 114.75 atmosphere 1010.0 30 < th dose independent rect. 2 1
17 114.75 radiation 1.0 30 < th dose independent rect. 2 1
22 114.75 precipitation 0.1 30 < th dose independent rect. 2 1
23 114.75 temperature 10.0 30 > th dose independent rect. 3 23
24 114.75 wind 3.0 30 < th dose dependent rect. 2 1
26 114.75 temperature 10.0 30 > th dose dependent rect. 2 1
27 114.75 radiation 1.0 30 < th dose dependent rect. 2 1
32 114.75 precipitation 0.1 30 < th dose dependent rect. 2 1
40 114.85 humidity 50.0 30 > th dose dependent rect. 2 1
46 115.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
47 115.02 temperature 30.0 30 < th dose dependent rect. 2 1
64 115.46 wind 1.0 30 > th dose independent rect. 2 1
101 116.86 wind 9.0 30 < th dose independent rect. 3 23
102 116.90 radiation 10.0 43200 < th dose dependent rect. 3 1
109 116.95 wind 9.0 1440 < th dose independent rect. 3 1
110 116.95 temperature 10.0 1440 > th dose independent rect. 3 1
113 116.95 temperature 30.0 1440 < th dose independent rect. 3 1
117 116.95 humidity 50.0 1440 > th dose independent rect. 3 1
126 116.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
127 116.95 radiation 1.0 1440 < th dose independent rect. 3 1
147 116.95 temperature 10.0 1440 > th dose independent rect. 4 23
150 116.95 radiation 1.0 1440 < th dose dependent rect. 3 1
163 117.39 atmosphere 995.0 30 > th dose independent rect. 3 23
177 118.57 precipitation 0.1 30 < th dose independent rect. 3 23
178 118.57 precipitation 0.1 30 < th dose dependent rect. 3 23
194 119.32 wind 1.0 30 < th dose independent rect. 24 3
254 120.50 wind 1.0 10 < th dose independent rect. 15 12
255 120.51 wind 1.0 10 < th dose independent rect. 22 5
267 120.79 wind 9.0 30 > th dose independent rect. 17 5
279 120.84 radiation 10.0 720 < th dose independent rect. 3 3
280 120.84 temperature 10.0 720 > th dose dependent rect. 3 3
307 120.88 wind 9.0 30 > th dose independent rect. 17 2
313 120.90 wind 9.0 90 > th dose dependent rect. 17 17
338 120.91 wind 9.0 90 > th dose dependent rect. 17 6
391 121.05 wind 9.0 90 > th dose dependent rect. 17 2
397 121.06 wind 9.0 10 > th dose dependent rect. 18 1
417 121.32 humidity 50.0 10 > th dose independent rect. 3 23
419 121.34 radiation 10.0 720 < th dose dependent rect. 3 3
421 121.36 humidity 50.0 720 > th dose independent rect. 3 12
422 121.37 temperature 10.0 90 > th dose dependent rect. 3 22
423 121.40 wind 9.0 720 < th dose independent rect. 15 12
428 121.44 precipitation 0.1 720 < th dose independent rect. 12 18
429 121.44 wind 7.0 10 > th dose dependent rect. 17 5
434 121.44 precipitation 0.1 720 < th dose dependent rect. 12 18
435 121.45 temperature 10.0 720 > th dose independent rect. 3 12
436 121.45 temperature 10.0 720 > th dose independent rect. 15 12
445 121.50 precipitation 0.1 720 < th dose independent rect. 17 7
446 121.50 atmosphere 995.0 720 > th dose independent rect. 3 12
447 121.50 wind 7.0 10 > th dose dependent rect. 17 3
449 121.50 precipitation 0.1 720 < th dose dependent rect. 17 7
451 121.52 precipitation 0.1 720 < th dose independent rect. 3 12
453 121.52 precipitation 0.1 720 < th dose dependent rect. 3 12
461 121.58 wind 1.0 10 < th dose independent rect. 7 20
477 121.72 wind 9.0 90 < th dose dependent rect. 3 22
478 121.73 wind 9.0 720 < th dose independent rect. 15 3
486 121.83 precipitation 0.1 720 < th dose independent rect. 12 9
487 121.83 atmosphere 1015.0 720 < th dose independent rect. 3 12
488 121.83 precipitation 0.1 720 < th dose dependent rect. 12 9
491 121.85 precipitation 0.1 720 < th dose independent rect. 9 15
493 121.85 precipitation 0.1 720 < th dose dependent rect. 9 15
494 121.86 wind 1.0 720 > th dose independent rect. 18 6
496 121.88 wind 1.0 10 > th dose independent sin 16 NA
497 121.88 temperature 10.0 720 > th dose independent rect. 15 3
498 121.88 atmosphere 1015.0 720 < th dose independent rect. 15 3
499 121.88 temperature 10.0 720 > th dose independent rect. 18 21
502 121.90 wind 9.0 10 < th dose independent sin 12 NA
503 121.90 wind 9.0 720 < th dose independent rect. 3 12
504 121.90 precipitation 0.1 720 < th dose independent rect. 18 21
506 121.90 precipitation 0.1 720 < th dose dependent rect. 18 21
507 121.91 wind 1.0 720 > th dose independent rect. 15 3
508 121.92 wind 9.0 720 < th dose independent rect. 3 3
509 121.92 temperature 10.0 720 > th dose independent rect. 3 3
510 121.92 temperature 30.0 720 < th dose independent rect. 3 3
511 121.92 humidity 50.0 720 > th dose independent rect. 3 3
514 121.92 atmosphere 995.0 720 > th dose independent rect. 3 3
518 121.92 precipitation 0.1 720 < th dose independent rect. 6 6
519 121.92 temperature 10.0 720 > th dose independent rect. 6 21
521 121.92 precipitation 0.1 720 < th dose dependent rect. 6 6
531 121.94 temperature 10.0 720 > th dose independent rect. 18 6
532 121.94 humidity 50.0 720 > th dose independent rect. 18 6
533 121.94 radiation 20.0 720 < th dose independent rect. 18 6
539 121.94 temperature 10.0 720 > th dose independent rect. 24 17
541 121.94 humidity 50.0 720 > th dose independent rect. 18 21
562 121.96 temperature 10.0 720 > th dose independent rect. 6 6
563 121.96 atmosphere 995.0 720 > th dose independent rect. 6 6
564 121.96 atmosphere 1015.0 720 < th dose independent rect. 6 6
565 121.96 temperature 10.0 720 > th dose independent rect. 12 18
568 121.97 precipitation 0.1 720 < th dose independent rect. 15 12
572 121.97 precipitation 0.1 720 < th dose dependent rect. 15 12
575 121.99 atmosphere 995.0 720 > th dose independent rect. 18 6
584 122.03 wind 9.0 10 > th dose independent sin 12 NA
586 122.03 humidity 50.0 720 > th dose independent rect. 6 6
599 122.03 temperature 20.0 720 > th dose dependent rect. 3 3
600 122.04 atmosphere 995.0 720 > th dose independent rect. 18 21
609 122.05 radiation 40.0 720 < th dose dependent rect. 18 6
615 122.07 wind 9.0 90 < th dose independent sin 13 NA
620 122.07 atmosphere 995.0 720 > th dose independent rect. 15 12
629 122.09 temperature 20.0 720 > th dose dependent rect. 4 1
641 122.13 temperature 10.0 10 > th dose dependent rect. 4 21
644 122.15 atmosphere 1015.0 720 < th dose independent rect. 3 3
645 122.15 precipitation 0.1 720 < th dose independent rect. 3 3
647 122.15 wind 9.0 720 < th dose independent rect. 18 6
650 122.15 precipitation 0.1 720 < th dose dependent rect. 3 3
652 122.16 wind 9.0 720 < th dose independent rect. 6 6
666 122.24 wind 1.0 10 > th dose independent rect. 19 12
669 122.26 radiation 40.0 720 < th dose independent rect. 15 12
676 122.28 wind 1.0 10 > th dose independent rect. 18 23
683 122.33 temperature 30.0 30 < th dose dependent rect. 20 1
690 122.35 temperature 15.0 720 > th dose independent rect. 12 3
699 122.40 temperature 30.0 720 < th dose independent rect. 24 9
700 122.40 radiation 40.0 10 < th dose independent rect. 4 22
715 122.44 wind 1.0 10 > th dose independent sin 9 NA
717 122.44 temperature 20.0 720 > th dose independent rect. 3 2
718 122.44 precipitation 0.1 720 < th dose independent rect. 15 3
719 122.44 precipitation 0.1 720 < th dose dependent rect. 15 3
721 122.45 radiation 40.0 720 < th dose independent rect. 15 3
722 122.46 wind 9.0 90 > th dose independent sin 13 NA
765 122.55 temperature 30.0 720 < th dose independent rect. 6 6
774 122.58 wind 9.0 720 < th dose independent rect. 18 21
819 122.61 wind 9.0 90 > th dose independent rect. 14 5
825 122.61 radiation 40.0 10 < th dose dependent rect. 4 22
828 122.63 humidity 90.0 90 < th dose independent rect. 1 2
830 122.63 humidity 50.0 720 > th dose dependent rect. 3 3
857 122.71 radiation 40.0 90 < th dose dependent rect. 15 12
858 122.72 atmosphere 995.0 720 > th dose independent rect. 15 3
863 122.72 wind 9.0 90 > th dose independent rect. 14 12
864 122.72 radiation 20.0 90 < th dose independent rect. 15 12
887 122.74 humidity 90.0 10 < th dose independent rect. 20 1
892 122.75 temperature 30.0 30 < th dose independent rect. 3 23
894 122.76 wind 1.0 10 < th dose independent sin 16 NA
897 122.76 precipitation 0.1 720 < th dose independent rect. 8 7
898 122.76 temperature 15.0 90 > th dose independent rect. 12 12
900 122.76 wind 5.0 30 < th dose dependent rect. 20 1
902 122.76 precipitation 0.1 720 < th dose dependent rect. 8 7
903 122.77 humidity 80.0 10 > th dose independent rect. 20 1
905 122.77 wind 9.0 720 < th dose independent rect. 24 18
909 122.79 atmosphere 1015.0 30 < th dose dependent rect. 20 1
915 122.81 wind 9.0 720 < th dose independent rect. 24 9
916 122.81 temperature 10.0 720 > th dose independent rect. 24 9
917 122.81 humidity 50.0 720 > th dose independent rect. 24 9
918 122.81 atmosphere 995.0 720 > th dose independent rect. 24 9
919 122.81 temperature 10.0 720 > th dose independent rect. 9 15
920 122.81 wind 9.0 90 > th dose dependent sin 13 NA
924 122.82 precipitation 0.1 720 < th dose independent rect. 24 18
925 122.82 wind 9.0 720 < th dose independent rect. 6 21
927 122.82 precipitation 0.1 720 < th dose dependent rect. 24 18
930 122.83 wind 7.0 10 < th dose independent rect. 20 1
932 122.83 atmosphere 995.0 720 > th dose independent rect. 12 18
970 122.87 temperature 10.0 720 > th dose independent rect. 12 9
971 122.87 precipitation 0.1 720 < th dose independent rect. 24 9
972 122.87 temperature 10.0 720 > th dose independent rect. 21 15
973 122.87 atmosphere 995.0 720 > th dose independent rect. 21 15
974 122.87 precipitation 0.1 720 < th dose dependent rect. 24 9
975 122.88 atmosphere 1000.0 10 > th dose independent rect. 20 1
994 122.92 wind 7.0 90 < th dose independent rect. 3 13