Os03g0369000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0369000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.84	(0.0439)	R²	:	0.127
β₁	:	-0.321	(0.175)	R²_dD	:	0.00836	R²_D	:	-0.0219
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-1.02	(0.458)	R²_dE	:	0.0257	R²_E	:	-0.1
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-25.6	(3.99)	R²_dD*E	:	0.221	R²_D*E	:	0.0931
γ₁	:	0.13	(0.0954)	R²_dN8	:	0.00519	R²_N8	:	0.00639
σ	:	0.799
deviance	:	294.28
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	7.896
memory length	:	18
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	6.17
open length of G	:	1.1

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
291.03	0.802	2.83	-0.332	0.216	-1.11	0.348	-25.8	0.137	10.4	8.146	16	6.05	1.05
327.18	0.849	2.85	0.177	0.302	-0.24	0.0682	--	0.23	9.03	2.133	20	4.99	1.52
291.51	0.795	2.83	-0.315	0.216	-1.12	--	-25.7	0.139	10.1	8.032	17	6.06	1.06
326.55	0.842	2.84	0.166	0.314	-0.501	--	--	0.264	9.1	-1.051	7	5.53	0.416
294.28	0.799	2.84	-0.321	--	-1.02	--	-25.6	0.13	--	7.896	18	6.17	1.1
327.44	0.848	2.85	0.18	0.288	--	0.0992	--	0.237	9.28	--	--	--	--
327.47	0.847	2.85	0.183	0.288	--	--	--	0.237	9.15	--	--	--	--
329.76	0.846	2.86	0.234	--	0.706	--	--	0.266	--	-1.408	3	6.02	2.66
326.88	0.847	2.86	--	0.331	-0.372	--	--	0.198	8.58	-10.26	2	5.5	1.21
332.28	0.852	2.86	0.183	--	--	--	--	0.239	--	--	--	--	--
328.36	0.848	2.86	--	0.288	--	--	--	0.217	9.1	--	--	--	--
327.66	0.846	2.87	--	--	0.676	--	--	0.188	--	-20.46	2	6.02	2.95
333.16	0.852	2.86	--	--	--	--	--	0.219	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	292.73	radiation	10.0	10	> th	dose independent	rect.	6	1
27	292.73	radiation	10.0	10	> th	dose dependent	rect.	6	1
53	294.03	wind	3.0	30	< th	dose dependent	rect.	6	1
54	294.28	atmosphere	1005.0	10	> th	dose dependent	rect.	6	1
57	296.85	temperature	30.0	30	< th	dose dependent	rect.	6	1
58	296.87	humidity	80.0	30	> th	dose dependent	rect.	6	1
66	298.84	wind	3.0	30	< th	dose independent	rect.	6	1
79	300.57	temperature	10.0	30	> th	dose independent	rect.	6	1
81	300.57	temperature	30.0	30	< th	dose independent	rect.	6	1
82	300.57	humidity	50.0	30	> th	dose independent	rect.	6	1
85	300.57	atmosphere	995.0	30	> th	dose independent	rect.	6	1
86	300.57	atmosphere	1015.0	30	< th	dose independent	rect.	6	1
88	300.57	radiation	20.0	30	< th	dose independent	rect.	6	1
91	300.57	precipitation	0.1	30	< th	dose independent	rect.	6	1
92	300.57	temperature	10.0	30	> th	dose independent	rect.	7	23
93	300.57	precipitation	0.1	30	< th	dose dependent	rect.	6	1
94	300.71	wind	1.0	30	> th	dose independent	rect.	6	1
98	300.93	humidity	90.0	30	< th	dose independent	rect.	6	1
99	301.00	temperature	25.0	10	> th	dose independent	rect.	6	1
102	301.18	wind	9.0	1440	< th	dose independent	rect.	7	1
103	301.18	temperature	10.0	1440	> th	dose independent	rect.	7	1
107	301.18	temperature	30.0	1440	< th	dose independent	rect.	7	1
111	301.18	humidity	50.0	1440	> th	dose independent	rect.	7	1
116	301.18	atmosphere	995.0	1440	> th	dose independent	rect.	7	1
117	301.18	atmosphere	1015.0	1440	< th	dose independent	rect.	7	1
118	301.18	temperature	10.0	1440	> th	dose independent	rect.	8	23
124	301.45	radiation	30.0	10	< th	dose dependent	rect.	6	1
145	301.96	temperature	10.0	30	> th	dose dependent	rect.	6	1
160	304.48	wind	9.0	30	< th	dose independent	rect.	7	23
165	305.00	wind	7.0	90	> th	dose dependent	rect.	8	1
167	305.28	wind	7.0	90	> th	dose independent	rect.	8	1
168	305.72	wind	5.0	10	> th	dose independent	rect.	10	1
172	305.72	wind	5.0	10	> th	dose dependent	rect.	10	1
179	305.80	humidity	90.0	10	< th	dose dependent	rect.	6	1
182	306.09	atmosphere	1015.0	30	< th	dose dependent	rect.	6	1
183	306.44	humidity	90.0	90	> th	dose independent	rect.	8	1
186	307.00	humidity	90.0	90	> th	dose dependent	rect.	8	1
193	308.07	wind	9.0	90	> th	dose dependent	rect.	21	13
203	308.67	temperature	30.0	30	< th	dose independent	rect.	7	23
205	308.71	atmosphere	995.0	30	> th	dose independent	rect.	7	23
209	309.10	wind	1.0	10	< th	dose independent	rect.	8	1
211	309.10	wind	1.0	10	< th	dose dependent	rect.	8	1
241	310.49	wind	1.0	30	> th	dose dependent	rect.	6	1
274	312.18	temperature	25.0	10	> th	dose independent	rect.	2	6
288	312.76	temperature	20.0	30	> th	dose dependent	rect.	2	5
311	313.59	temperature	30.0	14400	> th	dose independent	rect.	18	1
325	313.62	wind	1.0	270	< th	dose dependent	rect.	4	18
332	313.79	temperature	30.0	14400	< th	dose independent	rect.	18	1
333	313.79	temperature	30.0	14400	< th	dose independent	rect.	18	3
338	313.82	temperature	30.0	14400	< th	dose independent	rect.	18	8
343	313.90	temperature	30.0	14400	< th	dose independent	rect.	18	12
354	314.01	temperature	25.0	14400	> th	dose dependent	rect.	5	1
355	314.01	atmosphere	1005.0	30	> th	dose dependent	rect.	2	5
357	314.11	wind	1.0	90	< th	dose independent	rect.	6	5
368	314.50	temperature	25.0	14400	< th	dose independent	rect.	22	5
369	314.51	temperature	25.0	14400	< th	dose independent	rect.	1	2
373	314.56	temperature	25.0	14400	< th	dose independent	rect.	22	7
375	314.58	wind	1.0	270	< th	dose dependent	rect.	4	8
378	314.60	temperature	30.0	14400	> th	dose dependent	rect.	17	2
420	314.65	temperature	25.0	10	> th	dose independent	sin	7	NA
426	314.67	temperature	25.0	14400	> th	dose independent	rect.	21	9
429	314.71	temperature	25.0	14400	> th	dose independent	rect.	22	3
457	314.83	wind	5.0	30	< th	dose dependent	rect.	2	1
458	314.83	temperature	15.0	30	> th	dose dependent	rect.	2	1
470	314.89	temperature	25.0	14400	> th	dose independent	rect.	4	1
472	314.90	wind	3.0	30	< th	dose independent	rect.	2	1
479	314.92	humidity	80.0	30	> th	dose independent	rect.	2	1
480	314.92	atmosphere	995.0	30	> th	dose dependent	rect.	2	1
484	314.93	temperature	10.0	30	> th	dose independent	rect.	2	1
486	314.93	temperature	30.0	30	< th	dose independent	rect.	2	1
487	314.93	humidity	50.0	30	> th	dose independent	rect.	2	1
490	314.93	atmosphere	995.0	30	> th	dose independent	rect.	2	1
491	314.93	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
493	314.93	radiation	1.0	30	< th	dose independent	rect.	2	1
498	314.93	precipitation	0.1	30	< th	dose independent	rect.	2	1
499	314.93	temperature	10.0	30	> th	dose independent	rect.	3	23
500	314.93	humidity	50.0	30	> th	dose dependent	rect.	2	1
502	314.93	radiation	1.0	30	< th	dose dependent	rect.	2	1
507	314.93	precipitation	0.1	30	< th	dose dependent	rect.	2	1
511	314.95	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
519	314.98	temperature	25.0	14400	> th	dose dependent	rect.	21	1
580	315.19	atmosphere	1015.0	30	< th	dose dependent	rect.	2	1
585	315.21	temperature	30.0	14400	> th	dose dependent	rect.	8	2
603	315.25	temperature	25.0	14400	> th	dose dependent	rect.	21	9
618	315.36	temperature	30.0	14400	> th	dose independent	rect.	8	1
698	315.52	temperature	25.0	14400	< th	dose independent	rect.	4	1
717	315.54	temperature	25.0	720	> th	dose independent	rect.	20	1
718	315.54	temperature	30.0	14400	< th	dose independent	rect.	4	5
720	315.55	temperature	30.0	30	< th	dose dependent	rect.	2	1
725	315.56	wind	1.0	270	< th	dose dependent	rect.	4	13
789	315.66	precipitation	0.1	30	< th	dose independent	rect.	7	23
791	315.66	precipitation	0.1	30	< th	dose dependent	rect.	7	23
820	315.77	temperature	30.0	14400	> th	dose dependent	sin	10	NA
840	315.84	temperature	25.0	10	> th	dose independent	rect.	20	14
855	315.93	temperature	25.0	10	> th	dose independent	rect.	22	12
871	316.03	wind	1.0	30	> th	dose independent	rect.	2	1
879	316.06	temperature	25.0	10	> th	dose independent	rect.	18	16
930	316.28	temperature	20.0	720	> th	dose dependent	rect.	19	12
964	316.35	wind	1.0	30	> th	dose independent	rect.	7	23
992	316.39	temperature	20.0	720	> th	dose dependent	rect.	1	2
999	316.43	wind	1.0	270	< th	dose independent	rect.	4	8