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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0368900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0724) R2 : 0.202
β1 : -2.27 (0.267) R2dD : 0.134 R2D : 0.0891
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.98 (0.257) R2dE : 0.113 R2E : 0.0679
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.407 (0.158) R2dN8 : 0.0157 R2N8 : -0.0188
σ : 1.35
deviance : 835.56
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.75
memory length : 194
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.6
open length of G : 15.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
807 1.33 4.37 -3.32 0.264 2.32 -0.994 -6.91 -0.685 2.75 19.77 247 14.6 17
819.8 1.33 4.23 -2.35 0.231 2.32 2.03 -- -0.361 10.5 17.11 236 15.1 15.6
809.73 1.33 4.38 -3.36 0.267 2.39 -- -6.83 -0.716 4.11 19.5 246 14.6 16.8
836.06 1.35 4.25 -2.28 0.172 2.11 -- -- -0.385 9.39 17.3 229 15.2 15.5
811.5 1.33 4.37 -3.22 -- 2.3 -- -6.39 -0.672 -- 18.28 231 14.9 16.5
894.85 1.4 4.22 -2.04 0.793 -- -1.58 -- -0.135 23.5 -- -- -- --
905.59 1.41 4.22 -1.97 0.801 -- -- -- -0.128 23.4 -- -- -- --
835.56 1.35 4.26 -2.27 -- 1.98 -- -- -0.407 -- 17.75 194 15.6 15.9
967.2 1.45 4.19 -- 0.105 1.58 -- -- -0.0968 21.2 17.01 193 15.6 15.9
945.82 1.44 4.2 -1.95 -- -- -- -- -0.12 -- -- -- -- --
1008.27 1.49 4.17 -- 0.781 -- -- -- 0.0918 23.2 -- -- -- --
967.16 1.45 4.21 -- -- 1.73 -- -- -0.137 -- 19.12 180 15.9 15.6
1046.42 1.51 4.15 -- -- -- -- -- 0.0968 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 808.97 temperature 20.0 270 > th dose dependent rect. 14 17
13 816.32 temperature 20.0 90 > th dose dependent rect. 17 16
31 821.29 radiation 1.0 720 > th dose dependent rect. 18 11
42 822.74 temperature 20.0 270 > th dose dependent rect. 14 9
47 823.46 temperature 30.0 90 < th dose dependent rect. 19 8
56 824.72 radiation 1.0 720 > th dose dependent rect. 18 1
68 825.11 temperature 15.0 270 > th dose dependent rect. 14 5
69 825.24 humidity 90.0 90 < th dose independent rect. 17 2
79 826.09 temperature 25.0 270 > th dose independent rect. 14 6
82 826.75 temperature 20.0 90 > th dose dependent rect. 17 13
85 827.14 temperature 20.0 270 > th dose dependent sin 16 NA
93 827.56 temperature 20.0 90 > th dose independent rect. 17 2
136 830.33 humidity 90.0 90 < th dose dependent rect. 17 2
139 830.48 radiation 30.0 1440 < th dose independent rect. 21 11
140 830.48 temperature 20.0 30 > th dose independent rect. 16 17
149 830.91 radiation 30.0 1440 < th dose independent rect. 24 8
150 830.92 temperature 25.0 270 < th dose independent rect. 12 12
166 831.43 radiation 30.0 1440 > th dose independent rect. 16 16
174 831.99 temperature 25.0 270 < th dose independent rect. 18 6
185 832.25 radiation 30.0 1440 < th dose independent rect. 7 1
213 833.14 radiation 30.0 1440 < th dose independent rect. 3 5
214 833.17 temperature 30.0 270 < th dose dependent rect. 11 13
238 834.01 atmosphere 995.0 90 > th dose dependent rect. 19 8
240 834.07 temperature 15.0 90 > th dose dependent rect. 17 2
244 834.23 radiation 30.0 1440 < th dose independent rect. 17 15
252 834.44 wind 5.0 30 > th dose independent rect. 18 1
254 834.52 radiation 30.0 1440 > th dose independent rect. 7 1
273 834.61 radiation 1.0 270 < th dose dependent rect. 5 20
279 834.75 temperature 10.0 270 > th dose dependent rect. 24 19
330 836.39 humidity 90.0 270 < th dose independent rect. 14 5
346 837.04 temperature 30.0 270 < th dose dependent sin 17 NA
350 837.22 temperature 25.0 270 < th dose independent rect. 6 18
356 837.30 temperature 30.0 10 < th dose dependent rect. 14 13
367 837.48 temperature 25.0 720 > th dose dependent rect. 18 1
368 837.49 radiation 1.0 270 < th dose dependent rect. 9 16
387 837.78 temperature 25.0 1440 > th dose dependent rect. 16 1
390 837.80 temperature 20.0 270 > th dose independent rect. 14 16
396 837.94 temperature 20.0 90 > th dose independent rect. 16 14
409 838.19 atmosphere 1000.0 90 > th dose independent rect. 17 2
413 838.22 wind 5.0 30 > th dose dependent rect. 18 1
416 838.24 humidity 70.0 270 < th dose independent rect. 15 4
426 838.37 wind 7.0 30 < th dose independent rect. 19 23
436 838.55 temperature 25.0 270 < th dose independent rect. 19 2
439 838.56 radiation 1.0 270 < th dose dependent sin 15 NA
450 838.79 radiation 1.0 720 > th dose independent rect. 18 11
464 839.02 temperature 20.0 10 > th dose independent rect. 16 4
482 839.24 radiation 1.0 270 < th dose independent rect. 6 19
486 839.29 wind 1.0 270 > th dose independent rect. 1 18
489 839.36 temperature 30.0 10 < th dose dependent rect. 12 15
508 839.71 temperature 30.0 270 < th dose dependent rect. 6 18
512 839.79 temperature 10.0 1440 > th dose dependent rect. 7 1
518 839.94 temperature 30.0 10 < th dose dependent sin 14 NA
526 840.09 temperature 30.0 1440 < th dose dependent rect. 7 1
534 840.18 precipitation 0.1 90 < th dose independent rect. 17 2
535 840.18 precipitation 0.1 90 < th dose dependent rect. 17 2
542 840.27 wind 1.0 43200 > th dose independent rect. 17 2
559 840.40 temperature 15.0 90 > th dose independent rect. 3 16
565 840.42 radiation 1.0 270 < th dose independent rect. 9 16
569 840.46 humidity 50.0 90 > th dose independent rect. 19 22
574 840.49 temperature 15.0 270 > th dose independent rect. 24 19
591 840.73 radiation 1.0 4320 > th dose independent rect. 5 4
598 840.77 radiation 1.0 4320 < th dose independent rect. 5 4
611 840.89 wind 1.0 43200 < th dose independent rect. 17 2
616 840.95 radiation 1.0 270 < th dose dependent rect. 15 10
620 840.97 temperature 25.0 10 < th dose dependent rect. 6 21
646 841.17 radiation 1.0 4320 < th dose independent rect. 21 12
647 841.17 wind 1.0 90 > th dose dependent rect. 17 2
653 841.22 radiation 1.0 4320 < th dose independent rect. 24 9
662 841.26 humidity 50.0 270 > th dose independent rect. 9 15
668 841.27 radiation 20.0 1440 > th dose dependent rect. 16 15
670 841.29 wind 1.0 90 > th dose independent rect. 17 2
701 841.52 radiation 1.0 4320 < th dose independent rect. 2 7
702 841.52 radiation 40.0 90 < th dose dependent rect. 17 2
719 841.68 temperature 10.0 90 > th dose independent rect. 17 2
721 841.68 atmosphere 1010.0 90 < th dose independent rect. 17 2
723 841.68 radiation 20.0 90 < th dose independent rect. 17 2
727 841.68 temperature 10.0 90 > th dose independent rect. 19 22
734 841.74 radiation 1.0 270 > th dose independent rect. 15 4
751 841.77 humidity 70.0 720 < th dose independent rect. 18 1
755 841.78 radiation 20.0 1440 > th dose dependent rect. 16 1
793 841.94 radiation 1.0 270 < th dose dependent rect. 17 8
800 841.99 atmosphere 995.0 90 > th dose independent rect. 3 16
855 842.39 wind 7.0 270 < th dose independent rect. 19 19
857 842.40 precipitation 0.1 90 < th dose independent rect. 3 16
858 842.40 precipitation 0.1 90 < th dose dependent rect. 3 16
872 842.46 radiation 1.0 4320 > th dose independent rect. 5 2
874 842.48 radiation 1.0 4320 < th dose independent rect. 5 2
884 842.52 radiation 20.0 1440 > th dose independent rect. 16 1
900 842.54 temperature 20.0 10 < th dose independent rect. 15 12
912 842.62 temperature 15.0 10 > th dose dependent rect. 16 4
927 842.71 radiation 1.0 720 > th dose independent rect. 18 1
938 842.71 humidity 90.0 270 < th dose dependent rect. 14 5
983 842.97 wind 7.0 90 < th dose independent rect. 19 8