Os03g0368600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os03g0368600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 348.51 | 0.877 | 3.53 | -0.3 | 0.259 | -1.03 | 0.333 | -0.0947 | -0.671 | 8.03 | 25.24 | 1090 | -- | -- |
| 348.52 | 0.869 | 3.53 | -0.326 | 0.259 | -1.03 | 0.322 | -- | -0.678 | 8.01 | 25.3 | 1089 | -- | -- |
| 348.83 | 0.87 | 3.54 | -0.318 | 0.258 | -1.03 | -- | 0.0059 | -0.678 | 7.98 | 25.2 | 1089 | -- | -- |
| 348.83 | 0.87 | 3.54 | -0.317 | 0.259 | -1.03 | -- | -- | -0.678 | 7.97 | 25.21 | 1089 | -- | -- |
| 351.48 | 0.873 | 3.54 | -0.311 | -- | -1.02 | -- | -0.00244 | -0.667 | -- | 25.2 | 1154 | -- | -- |
| 378.59 | 0.912 | 3.46 | -0.00843 | 0.303 | -- | 0.0851 | -- | -0.318 | 4.01 | -- | -- | -- | -- |
| 378.61 | 0.911 | 3.46 | -0.00951 | 0.303 | -- | -- | -- | -0.318 | 3.97 | -- | -- | -- | -- |
| 351.48 | 0.873 | 3.54 | -0.311 | -- | -1.02 | -- | -- | -0.667 | -- | 25.2 | 1154 | -- | -- |
| 351.28 | 0.873 | 3.53 | -- | 0.242 | -0.949 | -- | -- | -0.62 | 7.92 | 25.23 | 1089 | -- | -- |
| 383.62 | 0.915 | 3.46 | 0.00289 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 378.61 | 0.91 | 3.46 | -- | 0.303 | -- | -- | -- | -0.317 | 3.97 | -- | -- | -- | -- |
| 353.84 | 0.876 | 3.53 | -- | -- | -0.936 | -- | -- | -0.608 | -- | 25.25 | 1143 | -- | -- |
| 383.62 | 0.914 | 3.46 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 348.78 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 2 | 348.78 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 3 | 348.80 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 7 | 348.83 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 8 | 348.83 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 27 | 349.30 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 29 | 349.36 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 38 | 349.56 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 42 | 349.58 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 60 | 349.64 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 65 | 349.66 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 74 | 349.73 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 84 | 349.84 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 93 | 349.89 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 116 | 350.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 134 | 350.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 144 | 350.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 163 | 350.32 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 166 | 350.36 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 183 | 350.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 188 | 350.46 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 190 | 350.46 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 231 | 350.59 | temperature | 20.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 232 | 350.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 269 | 350.68 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 17 |
| 298 | 350.75 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 345 | 350.83 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 367 | 350.86 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 369 | 350.86 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 435 | 350.95 | temperature | 20.0 | 43200 | < th | dose dependent | no | NA | NA |
| 437 | 350.95 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 463 | 351.02 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 466 | 351.02 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 474 | 351.05 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 494 | 351.08 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 570 | 351.19 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 571 | 351.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 582 | 351.22 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 594 | 351.22 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 626 | 351.27 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 669 | 351.33 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 671 | 351.33 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 711 | 351.38 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 777 | 351.48 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 814 | 351.53 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 828 | 351.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 832 | 351.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 842 | 351.57 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 860 | 351.58 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 876 | 351.61 | temperature | 20.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 879 | 351.61 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 913 | 351.65 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 918 | 351.66 | temperature | 20.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 923 | 351.67 | temperature | 20.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 927 | 351.67 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 965 | 351.71 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 976 | 351.72 | temperature | 20.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 992 | 351.73 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 995 | 351.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 999 | 351.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |