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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0368300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0244) R2 : 0.303
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.72 (0.413) R2dE : 0.302 R2E : 0.302
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00999 (0.0514) R2dN8 : 0.000477 R2N8 : 0.000637
σ : 0.458
deviance : 96.74
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.1
memory length : 117
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.05
open length of G : 0.0167

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.61 0.481 3.03 -0.129 0.106 3.79 0.127 -11 -0.0328 11.7 1.4 126 8.88 0.4
121.33 0.513 3.02 -0.0763 0.11 2.68 0.329 -- -0.0699 12.5 1.393 108 8.84 0.273
100.64 0.467 3.03 -0.124 0.116 4.12 -- -11.6 -0.0358 11.3 1.3 119 8.98 0.316
116.42 0.503 3.04 -0.403 0.0869 3.42 -- -- -0.103 10.7 1.261 157 9.03 0.112
101.37 0.469 3.03 -0.129 -- 4.28 -- -12.1 -0.0334 -- 1.31 117 8.99 0.317
136.06 0.547 3.02 -0.0749 0.188 -- -0.00498 -- -0.0714 10.9 -- -- -- --
136.06 0.546 3.02 -0.0751 0.188 -- -- -- -0.0714 10.9 -- -- -- --
109.66 0.488 3.02 -0.0803 -- 3.52 -- -- -0.0387 -- 1.224 154 9.02 0.05
99.5 0.465 3.05 -- 0.171 4.08 -- -- -0.065 10.8 1.107 119 9.06 0.0333
138.25 0.549 3.03 -0.0791 -- -- -- -- -0.0726 -- -- -- -- --
136.21 0.546 3.02 -- 0.188 -- -- -- -0.0631 10.9 -- -- -- --
96.74 0.458 3.02 -- -- 5.72 -- -- -0.00999 -- 1.1 117 9.05 0.0167
138.41 0.549 3.02 -- -- -- -- -- -0.0639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.65 wind 1 90 < th dose independent rect. 9 1
2 122.81 wind 1 90 < th dose dependent rect. 9 1
6 128.25 radiation 10 90 < th dose independent rect. 9 2
16 128.50 radiation 10 270 < th dose independent rect. 7 3
22 129.01 radiation 30 30 < th dose dependent rect. 9 4
30 129.23 wind 3 10 < th dose dependent rect. 9 1
35 129.46 humidity 60 1440 > th dose independent rect. 4 5
36 129.49 humidity 60 1440 > th dose independent rect. 6 3
43 129.68 humidity 60 1440 > th dose independent rect. 24 9
59 129.88 wind 1 10 < th dose dependent rect. 7 6
61 129.91 wind 1 10 < th dose dependent rect. 9 4
65 129.94 humidity 60 1440 > th dose independent rect. 21 12
67 129.95 humidity 60 270 < th dose independent rect. 8 1
93 129.95 humidity 60 270 < th dose dependent rect. 8 1
123 130.00 humidity 60 90 < th dose dependent rect. 17 17
128 130.04 humidity 60 30 < th dose independent rect. 17 17
132 130.06 humidity 60 90 < th dose dependent rect. 18 15
135 130.07 humidity 60 90 < th dose independent rect. 18 15
136 130.07 humidity 60 10 < th dose dependent rect. 17 17
188 130.14 humidity 60 10 < th dose independent rect. 10 1
191 130.14 humidity 60 10 < th dose dependent rect. 10 1
261 130.16 wind 1 10 < th dose independent rect. 9 4
361 130.23 wind 1 10 < th dose independent rect. 9 1
419 130.41 temperature 25 30 > th dose dependent rect. 9 1
420 130.41 radiation 10 10 < th dose dependent rect. 9 1
438 130.44 radiation 40 30 > th dose dependent rect. 9 1
458 130.45 radiation 20 10 < th dose independent rect. 12 1
596 130.74 humidity 70 10 > th dose independent rect. 9 4
616 130.83 wind 3 90 > th dose independent rect. 10 1
666 131.08 radiation 20 90 < th dose independent rect. 9 18
695 131.20 radiation 40 90 < th dose dependent rect. 9 18
753 131.35 radiation 30 30 < th dose independent rect. 11 16
810 131.47 radiation 40 30 < th dose dependent rect. 11 1
821 131.51 radiation 40 10 > th dose dependent sin 12 NA
840 131.56 humidity 70 30 > th dose dependent rect. 10 2
888 131.66 wind 1 30 < th dose independent rect. 2 1
893 131.68 wind 3 30 < th dose dependent rect. 2 1
895 131.69 humidity 80 30 > th dose independent rect. 2 1
896 131.69 humidity 70 30 > th dose independent rect. 9 18
897 131.70 humidity 80 30 > th dose dependent rect. 2 1
926 131.73 temperature 20 30 > th dose dependent rect. 2 1
928 131.74 temperature 20 30 > th dose independent rect. 2 1
938 131.76 atmosphere 1005 30 > th dose dependent rect. 2 1
953 131.80 temperature 25 30 < th dose independent rect. 2 1
954 131.80 radiation 40 10 > th dose independent rect. 9 1
992 131.81 temperature 10 30 > th dose independent rect. 2 1
995 131.81 humidity 50 30 > th dose independent rect. 2 1
998 131.81 atmosphere 995 30 > th dose independent rect. 2 1
999 131.81 atmosphere 1010 30 < th dose independent rect. 2 1