Os03g0368000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 1.
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Os03g0368000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.8 | 0.39 | 2.8 | 0.117 | 0.13 | 1.18 | -0.329 | 1.47 | 0.116 | 6.52 | 9.006 | 6 | -- | -- |
| 69.89 | 0.389 | 2.79 | 0.173 | 0.164 | 0.862 | -0.362 | -- | 0.158 | 6.27 | 9.2 | 5 | -- | -- |
| 69.06 | 0.387 | 2.8 | 0.11 | 0.129 | 1.15 | -- | 1.47 | 0.117 | 6.69 | 9.062 | 5 | -- | -- |
| 69.97 | 0.39 | 2.8 | 0.132 | 0.0978 | 0.741 | -- | -- | 0.109 | 6.21 | 9.191 | 5 | -- | -- |
| 69.91 | 0.389 | 2.8 | 0.112 | -- | 1.13 | -- | 1.49 | 0.119 | -- | 9.06 | 5 | -- | -- |
| 72.27 | 0.399 | 2.8 | 0.0618 | 0.122 | -- | -0.177 | -- | 0.0962 | 7.43 | -- | -- | -- | -- |
| 72.35 | 0.398 | 2.8 | 0.0581 | 0.122 | -- | -- | -- | 0.0967 | 7.67 | -- | -- | -- | -- |
| 70.75 | 0.392 | 2.8 | 0.115 | -- | 0.681 | -- | -- | 0.12 | -- | 9.148 | 5 | -- | -- |
| 69.88 | 0.389 | 2.8 | -- | 0.129 | 0.494 | -- | -- | 0.105 | 6.8 | 9.287 | 5 | -- | -- |
| 73.14 | 0.4 | 2.8 | 0.0598 | -- | -- | -- | -- | 0.0985 | -- | -- | -- | -- | -- |
| 72.44 | 0.398 | 2.8 | -- | 0.122 | -- | -- | -- | 0.0902 | 7.64 | -- | -- | -- | -- |
| 70.76 | 0.392 | 2.8 | -- | -- | 0.482 | -- | -- | 0.107 | -- | 9.277 | 5 | -- | -- |
| 73.24 | 0.399 | 2.8 | -- | -- | -- | -- | -- | 0.0918 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.72 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 65.01 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 4 | 65.11 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 65.13 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 7 | 65.35 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 9 | 65.37 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 12 | 65.81 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 15 | 66.26 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 23 | 66.49 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 25 | 66.51 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 34 | 66.51 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 40 | 66.52 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 42 | 66.52 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 43 | 66.52 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 46 | 66.52 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 47 | 66.52 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 49 | 66.52 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 54 | 66.52 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 56 | 66.52 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 57 | 66.52 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 61 | 66.52 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 70 | 66.57 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 71 | 66.58 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 74 | 66.60 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 76 | 66.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 79 | 66.60 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 83 | 66.60 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 92 | 66.60 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 93 | 66.60 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 94 | 66.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 103 | 66.60 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 113 | 66.64 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 123 | 66.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 128 | 66.80 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 210 | 68.01 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 23 |
| 211 | 68.01 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 254 | 68.65 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 279 | 68.65 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 346 | 68.84 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 347 | 68.84 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 365 | 68.92 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 377 | 68.98 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 432 | 69.05 | wind | 9.0 | 10 | > th | dose independent | sin | 7 | NA |
| 471 | 69.12 | wind | 9.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 526 | 69.17 | wind | 9.0 | 10 | < th | dose independent | sin | 7 | NA |
| 537 | 69.19 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 542 | 69.21 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 18 | NA |
| 579 | 69.27 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 10 |
| 599 | 69.31 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 605 | 69.34 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 617 | 69.36 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 637 | 69.42 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 639 | 69.43 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 15 | 5 |
| 649 | 69.44 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 19 | 9 |
| 655 | 69.45 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 19 | 7 |
| 658 | 69.46 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 700 | 69.54 | wind | 7.0 | 10 | > th | dose dependent | rect. | 10 | 2 |
| 711 | 69.56 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 775 | 69.63 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 885 | 69.73 | wind | 5.0 | 90 | > th | dose dependent | rect. | 9 | 2 |
| 895 | 69.76 | wind | 9.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 929 | 69.76 | wind | 5.0 | 90 | > th | dose dependent | rect. | 9 | 4 |
| 941 | 69.78 | wind | 7.0 | 90 | > th | dose independent | rect. | 9 | 2 |