Os03g0366900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os03g0366900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.75 | 0.467 | 6.45 | -0.0134 | 0.448 | -0.787 | -0.452 | -1.14 | 0.306 | 3.48 | 44.54 | 1346 | -- | -- |
| 100.19 | 0.466 | 6.44 | 0.0826 | 0.453 | -0.848 | -0.449 | -- | 0.332 | 3.1 | 43.43 | 1247 | -- | -- |
| 99.24 | 0.464 | 6.45 | -0.000526 | 0.453 | -0.802 | -- | -1.17 | 0.306 | 2.97 | 44.43 | 1291 | -- | -- |
| 100.56 | 0.467 | 6.44 | 0.147 | 0.45 | -0.789 | -- | -- | 0.369 | 2.68 | 40 | 1250 | -- | -- |
| 104.89 | 0.477 | 6.44 | 0.0553 | -- | -0.957 | -- | -0.793 | 0.356 | -- | 40.61 | 1867 | -- | -- |
| 117.8 | 0.509 | 6.46 | 0.0701 | 0.376 | -- | -0.705 | -- | 0.243 | 4.12 | -- | -- | -- | -- |
| 119.11 | 0.511 | 6.46 | 0.0776 | 0.37 | -- | -- | -- | 0.247 | 3.7 | -- | -- | -- | -- |
| 105.48 | 0.478 | 6.43 | 0.133 | -- | -0.958 | -- | -- | 0.375 | -- | 40 | 1875 | -- | -- |
| 101.08 | 0.468 | 6.44 | -- | 0.443 | -0.811 | -- | -- | 0.341 | 2.72 | 41.03 | 1250 | -- | -- |
| 126.71 | 0.526 | 6.46 | 0.0931 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 119.27 | 0.511 | 6.46 | -- | 0.372 | -- | -- | -- | 0.238 | 3.7 | -- | -- | -- | -- |
| 105.95 | 0.479 | 6.44 | -- | -- | -0.951 | -- | -- | 0.36 | -- | 40 | 1875 | -- | -- |
| 126.94 | 0.526 | 6.46 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.60 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 97.85 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 16 | 98.20 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 17 | 98.26 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 19 | 98.38 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 20 | 98.39 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 21 | 98.46 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 23 | 98.62 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 39 | 98.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 41 | 98.72 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 42 | 98.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 45 | 98.81 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 46 | 98.88 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 48 | 98.94 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 71 | 99.11 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 74 | 99.12 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 75 | 99.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 82 | 99.17 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 83 | 99.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 87 | 99.23 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 90 | 99.24 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 99 | 99.26 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 100 | 99.26 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 101 | 99.27 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 130 | 99.33 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 134 | 99.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 136 | 99.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 173 | 99.42 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 176 | 99.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 178 | 99.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 190 | 99.46 | radiation | 40 | 1440 | < th | dose independent | sin | 12 | NA |
| 206 | 99.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 210 | 99.50 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 214 | 99.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 237 | 99.54 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 242 | 99.54 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 265 | 99.58 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 3 |
| 293 | 99.61 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 302 | 99.61 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 306 | 99.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 316 | 99.63 | temperature | 25 | 14400 | > th | dose dependent | sin | 13 | NA |
| 321 | 99.64 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 322 | 99.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 350 | 99.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 384 | 99.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 437 | 99.73 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 438 | 99.73 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 469 | 99.76 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 473 | 99.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 477 | 99.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 480 | 99.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 481 | 99.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 492 | 99.78 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 494 | 99.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 519 | 99.79 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 552 | 99.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 587 | 99.82 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 597 | 99.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 602 | 99.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 603 | 99.82 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 605 | 99.82 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 782 | 99.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 814 | 99.85 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 816 | 99.85 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 830 | 99.86 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 900 | 99.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 947 | 99.89 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 974 | 99.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 977 | 99.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 14 |