Os03g0366200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CaMK1.
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Os03g0366200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CaMK1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.5 | 0.276 | 10.7 | -0.0257 | 0.107 | -0.21 | 0.493 | 4.39 | -0.0327 | 1.46 | 30.9 | 4077 | -- | -- |
| 35.21 | 0.276 | 10.8 | -0.68 | 0.095 | 0.308 | 0.476 | -- | -0.0378 | 1.04 | 29.59 | 4248 | -- | -- |
| 35.4 | 0.277 | 10.7 | -0.0425 | 0.115 | -0.202 | -- | 4.4 | -0.0365 | 2.71 | 30.89 | 4057 | -- | -- |
| 36.03 | 0.28 | 10.8 | -0.697 | 0.121 | 0.328 | -- | -- | -0.0298 | 2.91 | 29.7 | 4334 | -- | -- |
| 36.16 | 0.28 | 10.7 | -0.0351 | -- | -0.193 | -- | 4.47 | -0.0287 | -- | 30.94 | 4054 | -- | -- |
| 38.71 | 0.292 | 10.8 | -0.598 | 0.138 | -- | 0.549 | -- | -0.0825 | 1.71 | -- | -- | -- | -- |
| 39.83 | 0.296 | 10.8 | -0.616 | 0.145 | -- | -- | -- | -0.0862 | 2.69 | -- | -- | -- | -- |
| 36.87 | 0.283 | 10.8 | -0.695 | -- | 0.344 | -- | -- | -0.0247 | -- | 29.7 | 4314 | -- | -- |
| 48.27 | 0.324 | 10.8 | -- | 0.116 | 0.207 | -- | -- | 0.0248 | 2.69 | 30.2 | 4348 | -- | -- |
| 41.06 | 0.299 | 10.8 | -0.61 | -- | -- | -- | -- | -0.0826 | -- | -- | -- | -- | -- |
| 49.85 | 0.33 | 10.8 | -- | 0.133 | -- | -- | -- | -0.0176 | 2.63 | -- | -- | -- | -- |
| 45.85 | 0.315 | 10.7 | -- | -- | -0.363 | -- | -- | 0.0952 | -- | 8.179 | 46479 | -- | -- |
| 50.89 | 0.333 | 10.8 | -- | -- | -- | -- | -- | -0.0148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.26 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 2 | 33.40 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 3 | 33.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 6 | 33.52 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 11 | 33.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 14 | 33.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 15 | 33.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 18 | 33.60 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 19 | 33.60 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 21 | 33.61 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 22 | 33.61 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 25 | 33.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 32 | 33.62 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 36 | 33.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 108 | 33.73 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 110 | 33.73 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 115 | 33.74 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 130 | 33.78 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 221 | 33.92 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 226 | 33.94 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 229 | 33.96 | wind | 1.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 232 | 33.96 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 248 | 34.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 260 | 34.04 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 261 | 34.04 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 262 | 34.04 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 287 | 34.07 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 290 | 34.07 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 308 | 34.11 | wind | 1.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 322 | 34.14 | wind | 1.0 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 325 | 34.14 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 328 | 34.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 330 | 34.16 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 337 | 34.17 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 338 | 34.17 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 342 | 34.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 353 | 34.18 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 358 | 34.20 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 373 | 34.23 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 376 | 34.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 377 | 34.24 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 383 | 34.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 386 | 34.25 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 391 | 34.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 396 | 34.28 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 444 | 34.33 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 450 | 34.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 518 | 34.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 524 | 34.43 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 535 | 34.44 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 553 | 34.46 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 611 | 34.48 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 635 | 34.49 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 659 | 34.51 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 690 | 34.52 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 729 | 34.53 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 750 | 34.54 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 760 | 34.54 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 810 | 34.56 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 812 | 34.56 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 832 | 34.57 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 836 | 34.58 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 840 | 34.58 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 841 | 34.58 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 843 | 34.58 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 863 | 34.59 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 878 | 34.59 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 888 | 34.59 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 912 | 34.61 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 934 | 34.62 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 938 | 34.62 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 939 | 34.62 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 997 | 34.64 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 998 | 34.64 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |