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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0366100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0413) R2 : 0.115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.46 (0.199) R2dE : 0.106 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0873) R2dN8 : 0.00513 R2N8 : 0.00867
σ : 0.774
deviance : 276.53
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.2
memory length : 321
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.48 0.768 3.4 -2.09 0.0319 8.85 -0.724 -43.3 -0.152 3.95 998.6 297 -- --
283.92 0.791 3.06 -0.185 0.0492 1.09 -0.636 -- -0.154 3.57 998.6 297 -- --
267.37 0.762 3.36 -1.87 0.0684 8.95 -- -43.4 -0.147 23.8 998.3 355 -- --
275.37 0.773 3.06 -0.193 0.0675 1.5 -- -- -0.153 3.71 998.3 321 -- --
267.68 0.762 3.36 -1.87 -- 8.93 -- -43.4 -0.148 -- 998.3 355 -- --
307.9 0.823 3.08 -0.0474 0.0627 -- -0.593 -- -0.206 3.45 -- -- -- --
308.93 0.823 3.07 -0.0369 0.0663 -- -- -- -0.203 1.33 -- -- -- --
275.63 0.773 3.06 -0.186 -- 1.49 -- -- -0.143 -- 998.3 321 -- --
276.15 0.774 3.06 -- 0.0754 1.45 -- -- -0.127 1.27 998.3 321 -- --
309.2 0.822 3.07 -0.0343 -- -- -- -- -0.201 -- -- -- -- --
308.97 0.822 3.07 -- 0.0657 -- -- -- -0.199 1.31 -- -- -- --
276.53 0.774 3.06 -- -- 1.46 -- -- -0.124 -- 998.2 321 -- --
309.24 0.821 3.07 -- -- -- -- -- -0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.95 atmosphere 1000 10 < th dose dependent rect. 24 19
5 265.50 atmosphere 1000 10 < th dose dependent rect. 7 20
12 265.59 atmosphere 1000 10 < th dose dependent rect. 22 21
15 265.75 atmosphere 1000 270 < th dose dependent rect. 21 21
39 266.30 atmosphere 1000 1440 < th dose independent rect. 2 6
42 266.34 atmosphere 1000 1440 > th dose independent rect. 5 2
48 266.56 atmosphere 1000 1440 < th dose independent rect. 5 3
57 266.73 atmosphere 1000 1440 < th dose independent rect. 23 9
59 266.76 atmosphere 1000 1440 > th dose independent rect. 22 10
70 266.93 atmosphere 1000 1440 < th dose independent rect. 7 1
72 266.93 atmosphere 1000 10 < th dose dependent rect. 16 23
74 266.95 atmosphere 1000 10 < th dose dependent rect. 20 23
92 267.21 atmosphere 1000 10 < th dose dependent rect. 10 23
102 267.28 atmosphere 1000 1440 > th dose independent rect. 2 6
169 267.94 atmosphere 1000 10 < th dose dependent rect. 4 23
196 268.19 atmosphere 1000 10 < th dose dependent no NA NA
208 268.30 atmosphere 1000 10 < th dose dependent rect. 13 23
237 268.56 atmosphere 1000 1440 > th dose independent rect. 24 1
295 269.15 atmosphere 1000 1440 > th dose independent rect. 3 1
331 269.66 atmosphere 1000 720 < th dose independent rect. 19 18
352 270.03 atmosphere 1000 1440 < th dose dependent rect. 6 1
510 273.57 atmosphere 1000 1440 < th dose independent sin 8 NA
513 273.57 atmosphere 1000 10 < th dose dependent rect. 7 12
537 273.89 temperature 30 4320 < th dose independent rect. 2 8
566 274.33 temperature 30 4320 < th dose independent rect. 9 1
568 274.34 atmosphere 1000 270 < th dose independent rect. 21 20
577 274.39 atmosphere 1000 1440 < th dose dependent rect. 1 7
578 274.41 temperature 30 4320 > th dose dependent rect. 11 1
581 274.43 temperature 30 4320 < th dose independent rect. 19 15
591 274.53 atmosphere 1000 270 < th dose dependent sin 3 NA
602 274.62 atmosphere 1000 270 < th dose dependent rect. 3 15
604 274.66 atmosphere 1000 1440 < th dose dependent rect. 24 12
615 274.75 temperature 30 4320 > th dose independent rect. 9 1
632 274.95 temperature 30 4320 > th dose independent rect. 9 3
662 275.02 temperature 30 4320 < th dose independent rect. 22 12
671 275.05 atmosphere 1000 1440 > th dose independent sin 8 NA
672 275.05 temperature 30 4320 > th dose dependent rect. 9 4
690 275.07 temperature 30 4320 < th dose independent rect. 6 4
708 275.10 temperature 30 4320 < th dose independent rect. 19 17
722 275.18 temperature 30 4320 < th dose independent rect. 9 3
818 275.52 temperature 30 4320 > th dose dependent sin 8 NA
863 275.69 atmosphere 1000 10 < th dose dependent rect. 10 18
865 275.70 temperature 30 4320 > th dose independent sin 9 NA
902 275.90 temperature 30 4320 < th dose independent sin 9 NA
929 275.97 atmosphere 1000 10 < th dose dependent rect. 24 15
941 276.01 atmosphere 1000 10 < th dose dependent sin 1 NA
950 276.09 atmosphere 1000 270 < th dose independent rect. 3 23
957 276.11 temperature 30 4320 < th dose independent rect. 17 19