Os03g0365200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0365200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.84 | 0.596 | 4.82 | -0.0981 | 1.48 | 0.585 | 0.449 | -1.03 | -0.713 | 17.8 | 22.1 | 763 | -- | -- |
| 163.89 | 0.596 | 4.79 | 0.179 | 1.49 | 0.646 | 0.353 | -- | -0.641 | 17.8 | 21.7 | 861 | -- | -- |
| 161.3 | 0.592 | 4.81 | -0.0728 | 1.48 | 0.592 | -- | -0.941 | -0.71 | 17.8 | 22.02 | 760 | -- | -- |
| 163.79 | 0.596 | 4.78 | 0.18 | 1.5 | 0.645 | -- | -- | -0.638 | 17.8 | 21.72 | 861 | -- | -- |
| 268.1 | 0.763 | 4.79 | -0.117 | -- | 0.817 | -- | -0.708 | -0.757 | -- | 21.6 | 494 | -- | -- |
| 179.18 | 0.628 | 4.74 | 0.423 | 1.54 | -- | 0.119 | -- | -0.443 | 18 | -- | -- | -- | -- |
| 179.22 | 0.627 | 4.74 | 0.422 | 1.54 | -- | -- | -- | -0.443 | 18 | -- | -- | -- | -- |
| 227.5 | 0.702 | 4.79 | -0.0389 | -- | 1.1 | -- | -- | -0.761 | -- | 26.6 | 338 | -- | -- |
| 164.59 | 0.598 | 4.79 | -- | 1.49 | 0.697 | -- | -- | -0.668 | 17.7 | 21.61 | 866 | -- | -- |
| 302.39 | 0.813 | 4.72 | 0.377 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 183.9 | 0.634 | 4.75 | -- | 1.54 | -- | -- | -- | -0.49 | 18.1 | -- | -- | -- | -- |
| 224.42 | 0.698 | 4.76 | -- | -- | 1.25 | -- | -- | -0.655 | -- | 27.74 | 400 | -- | -- |
| 306.14 | 0.817 | 4.73 | -- | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 11 | 157.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 20 | 157.79 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 39 | 158.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 42 | 158.26 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 70 | 158.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 112 | 159.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 121 | 159.32 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 136 | 159.45 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 137 | 159.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 140 | 159.47 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 148 | 159.56 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |
| 155 | 159.60 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 163 | 159.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 188 | 159.99 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 197 | 160.11 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 5 |
| 216 | 160.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 268 | 160.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 310 | 160.90 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 352 | 161.14 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 354 | 161.15 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 382 | 161.32 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 11 |
| 430 | 161.51 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 472 | 161.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 554 | 161.99 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 585 | 162.10 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 601 | 162.19 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 635 | 162.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 648 | 162.37 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 714 | 162.71 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 9 |
| 794 | 162.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 802 | 163.01 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 803 | 163.01 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 812 | 163.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 864 | 163.25 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 865 | 163.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 898 | 163.34 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 940 | 163.46 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 15 |
| 957 | 163.52 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 7 |
| 986 | 163.64 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 12 |
| 988 | 163.65 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |