Os03g0364000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UV excision repair protein Rad23 family protein.
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Os03g0364000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UV excision repair protein Rad23 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.48 | 0.128 | 10.5 | 0.147 | 0.219 | -0.696 | -0.0359 | 0.751 | -0.0502 | 22.9 | 15.1 | 370 | -- | -- |
| 7.9 | 0.131 | 10.5 | 0.033 | 0.255 | -0.705 | -0.0465 | -- | -0.0751 | 23 | 14.66 | 436 | -- | -- |
| 7.48 | 0.127 | 10.5 | 0.148 | 0.217 | -0.699 | -- | 0.747 | -0.0501 | 22.9 | 15 | 369 | -- | -- |
| 7.88 | 0.131 | 10.5 | 0.0248 | 0.234 | -0.689 | -- | -- | -0.082 | 23 | 14.63 | 401 | -- | -- |
| 8.23 | 0.134 | 10.5 | 0.138 | -- | -0.771 | -- | 0.758 | -0.0413 | -- | 15.21 | 40 | -- | -- |
| 13.16 | 0.17 | 10.5 | -0.128 | 0.269 | -- | -0.0318 | -- | -0.185 | 2 | -- | -- | -- | -- |
| 13.17 | 0.17 | 10.5 | -0.127 | 0.269 | -- | -- | -- | -0.185 | 2 | -- | -- | -- | -- |
| 8.69 | 0.137 | 10.5 | 0.0307 | -- | -0.787 | -- | -- | -0.0748 | -- | 12.4 | 42 | -- | -- |
| 7.9 | 0.131 | 10.5 | -- | 0.219 | -0.678 | -- | -- | -0.0878 | 23 | 14.7 | 372 | -- | -- |
| 17.51 | 0.196 | 10.5 | -0.115 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 13.59 | 0.172 | 10.5 | -- | 0.266 | -- | -- | -- | -0.171 | 1.99 | -- | -- | -- | -- |
| 8.69 | 0.137 | 10.5 | -- | -- | -0.781 | -- | -- | -0.0789 | -- | 14.4 | 26 | -- | -- |
| 17.86 | 0.197 | 10.5 | -- | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 7.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 6 | 7.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 19 | 7.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 41 | 7.52 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 42 | 7.52 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 47 | 7.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 54 | 7.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 70 | 7.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 163 | 7.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 205 | 7.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 305 | 7.84 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 361 | 7.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 368 | 7.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 408 | 7.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 444 | 7.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 519 | 7.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 532 | 8.00 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 533 | 8.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 563 | 8.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 564 | 8.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 655 | 8.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 658 | 8.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 844 | 8.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |