FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0361500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0432) R2 : 0.244
β1 : 0.746 (0.163) R2dD : 0.0399 R2D : -0.0119
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.21 (0.196) R2dE : 0.27 R2E : 0.205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0993 (0.0994) R2dN8 : 0.00262 R2N8 : -0.0192
σ : 0.787
deviance : 285.87
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.76
memory length : 551
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.53 0.793 4.06 0.723 0.488 2.28 0.272 0.519 0.0612 8.28 25.11 1548 -- --
284.79 0.786 4.06 0.814 0.485 2.25 0.265 -- 0.0786 8.17 25.3 1548 -- --
284.76 0.786 4.06 0.734 0.486 2.28 -- 0.5 0.0627 8.32 25.12 1549 -- --
284.98 0.786 4.05 0.826 0.484 2.23 -- -- 0.0834 8.31 25.3 1554 -- --
286.18 0.788 4.07 0.714 -- 2.33 -- 0.626 0.102 -- 25.51 571 -- --
351.52 0.879 4.16 0.13 0.472 -- 0.355 -- -0.391 8.52 -- -- -- --
351.92 0.878 4.16 0.142 0.47 -- -- -- -0.391 8.58 -- -- -- --
285.87 0.787 4.06 0.746 -- 2.21 -- -- 0.0993 -- 25.76 551 -- --
300.02 0.807 4.09 -- 0.489 1.81 -- -- -0.0775 8.13 25.53 1499 -- --
364.36 0.892 4.17 0.144 -- -- -- -- -0.387 -- -- -- -- --
352.45 0.878 4.16 -- 0.471 -- -- -- -0.407 8.56 -- -- -- --
298.52 0.805 4.1 -- -- 1.91 -- -- -0.0454 -- 25.8 530 -- --
364.9 0.892 4.18 -- -- -- -- -- -0.403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 273.11 temperature 25 1440 < th dose dependent rect. 17 2
2 273.39 temperature 25 1440 < th dose dependent rect. 17 4
22 277.34 wind 9 43200 > th dose dependent rect. 18 12
50 279.43 temperature 25 1440 < th dose dependent sin 17 NA
59 279.79 wind 9 43200 > th dose dependent rect. 18 4
120 282.34 temperature 25 270 < th dose dependent rect. 23 23
140 282.84 wind 9 43200 < th dose independent rect. 18 3
141 282.85 wind 9 43200 > th dose independent rect. 18 3
156 283.23 temperature 25 720 < th dose dependent rect. 7 21
178 283.82 wind 9 43200 > th dose independent rect. 18 12
210 284.23 temperature 30 10 < th dose dependent rect. 14 22
267 284.77 wind 7 43200 > th dose independent rect. 20 1
276 284.81 temperature 25 1440 < th dose dependent rect. 1 23
279 284.83 temperature 25 1440 < th dose dependent no NA NA
346 285.37 temperature 25 1440 < th dose dependent rect. 20 23
536 286.90 temperature 10 1440 > th dose dependent rect. 17 12
577 287.21 temperature 10 1440 > th dose dependent rect. 20 1
585 287.27 wind 7 43200 < th dose independent rect. 20 1
603 287.37 wind 9 43200 < th dose independent rect. 18 12
648 287.69 wind 9 43200 < th dose independent rect. 18 7
679 287.89 wind 9 43200 < th dose independent rect. 18 10
697 287.99 temperature 30 10 < th dose dependent rect. 21 23
731 288.15 temperature 15 10 > th dose dependent rect. 4 23
779 288.46 temperature 10 1440 > th dose dependent sin 12 NA
797 288.53 temperature 30 10 < th dose dependent rect. 3 23
831 288.66 temperature 15 270 > th dose dependent rect. 16 23
867 288.85 temperature 30 10 < th dose dependent no NA NA
897 288.96 temperature 10 720 > th dose dependent rect. 18 22
910 289.03 temperature 10 720 > th dose dependent rect. 12 19
918 289.06 temperature 15 90 > th dose dependent rect. 4 23
920 289.08 wind 5 43200 > th dose dependent rect. 20 1
978 289.30 temperature 30 10 < th dose dependent rect. 11 23