Os03g0359600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 231.
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Os03g0359600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 231.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.42 | 0.526 | 3.07 | 0.383 | 0.158 | 0.508 | 0.198 | 1.56 | 0.26 | 0.74 | 998.9 | 6305 | -- | -- |
| 127.25 | 0.525 | 3.09 | 0.302 | 0.167 | 0.78 | 0.172 | -- | 0.27 | 0.789 | 999 | 5600 | -- | -- |
| 125.59 | 0.522 | 3.07 | 0.375 | 0.158 | 0.512 | -- | 1.55 | 0.259 | 0.712 | 998.9 | 6289 | -- | -- |
| 127.37 | 0.526 | 3.09 | 0.296 | 0.165 | 0.782 | -- | -- | 0.269 | 0.749 | 999 | 5591 | -- | -- |
| 127.14 | 0.525 | 3.07 | 0.381 | -- | 0.506 | -- | 1.58 | 0.262 | -- | 998.9 | 6233 | -- | -- |
| 144.19 | 0.563 | 3.1 | 0.441 | 0.156 | -- | 0.214 | -- | 0.197 | 0.815 | -- | -- | -- | -- |
| 144.38 | 0.563 | 3.1 | 0.433 | 0.155 | -- | -- | -- | 0.196 | 0.748 | -- | -- | -- | -- |
| 129.06 | 0.529 | 3.08 | 0.304 | -- | 0.776 | -- | -- | 0.271 | -- | 999 | 5593 | -- | -- |
| 129.61 | 0.53 | 3.09 | -- | 0.172 | 0.83 | -- | -- | 0.243 | 0.82 | 998.9 | 5570 | -- | -- |
| 145.89 | 0.564 | 3.1 | 0.439 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 149.33 | 0.572 | 3.11 | -- | 0.162 | -- | -- | -- | 0.147 | 0.871 | -- | -- | -- | -- |
| 131.41 | 0.534 | 3.09 | -- | -- | 0.829 | -- | -- | 0.244 | -- | 998.9 | 5530 | -- | -- |
| 150.97 | 0.574 | 3.11 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.22 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 7 | 117.99 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 9 | 118.04 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 10 | 118.08 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 17 | 118.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 20 | 118.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 21 | 118.62 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 138 | 120.53 | wind | 7.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 155 | 120.83 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 176 | 121.24 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 182 | 121.83 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 219 | 121.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 226 | 121.93 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 229 | 121.94 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 242 | 121.97 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 343 | 122.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 358 | 122.36 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 365 | 122.40 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 369 | 122.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 374 | 122.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 390 | 122.58 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 3 |
| 397 | 122.69 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 406 | 122.88 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 471 | 123.79 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 475 | 123.91 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 500 | 124.30 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 511 | 124.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 530 | 124.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 24 | 15 |
| 533 | 124.55 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 534 | 124.55 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 561 | 124.73 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 573 | 124.86 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 585 | 124.99 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 620 | 125.10 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 646 | 125.14 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 717 | 125.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 719 | 125.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 722 | 125.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 723 | 125.38 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 728 | 125.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 754 | 125.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 768 | 125.58 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 778 | 125.64 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 786 | 125.66 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 789 | 125.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 790 | 125.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 799 | 125.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 801 | 125.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 804 | 125.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 811 | 125.68 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 824 | 125.68 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 828 | 125.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 839 | 125.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 18 |
| 858 | 125.72 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 859 | 125.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 912 | 125.79 | atmosphere | 995.0 | 14400 | < th | dose independent | no | NA | NA |
| 913 | 125.79 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 988 | 125.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 992 | 125.81 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 1 | 23 |