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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0357400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0216) R2 : 0.0116
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0454) R2dN8 : 0.0149 R2N8 : 0.0116
σ : 0.406
deviance : 75.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.9 0.404 2.9 0.0373 0.245 0.227 -0.457 -0.187 0.0878 1.71 2.412 75 -- --
73.95 0.401 2.9 0.043 0.243 0.225 -0.255 -- 0.0917 1.72 2.41 74 -- --
74.12 0.401 2.9 0.0532 0.244 0.226 -- 0.133 0.0917 1.66 2.419 69 -- --
74.2 0.401 2.9 0.053 0.253 0.234 -- -- 0.0924 1.61 2.41 75 -- --
75.14 0.406 2.89 0.0563 -- 0.0617 -- 0.111 0.108 -- 2.419 69 -- --
75.12 0.406 2.89 0.0533 0.0728 -- -0.339 -- 0.108 5.51 -- -- -- --
75.24 0.406 2.89 0.0534 0.0878 -- -- -- 0.11 7.83 -- -- -- --
74.91 0.405 2.89 0.0589 -- 0.0818 -- -- 0.11 -- 4.63 80 -- --
74.27 0.401 2.9 -- 0.255 0.235 -- -- 0.0844 1.62 2.41 75 -- --
75.66 0.406 2.89 0.0544 -- -- -- -- 0.111 -- -- -- -- --
75.32 0.406 2.89 -- 0.0882 -- -- -- 0.104 7.79 -- -- -- --
75 0.405 2.89 -- -- 0.081 -- -- 0.103 -- 4.63 80 -- --
75.74 0.406 2.89 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.46 temperature 10.0 1440 > th dose independent rect. 15 1
6 67.46 temperature 10.0 1440 > th dose independent rect. 16 23
9 67.58 radiation 30.0 30 > th dose independent rect. 14 1
10 67.63 humidity 60.0 30 > th dose independent rect. 14 1
11 67.64 atmosphere 1005.0 30 > th dose independent rect. 14 1
12 67.66 temperature 25.0 30 > th dose independent rect. 14 1
13 67.66 humidity 70.0 30 < th dose independent rect. 14 1
16 67.67 atmosphere 1000.0 30 > th dose dependent rect. 14 1
18 67.68 wind 1.0 30 > th dose dependent rect. 14 1
20 67.69 temperature 20.0 30 > th dose dependent rect. 14 1
22 67.69 radiation 1.0 30 > th dose dependent rect. 14 1
24 67.70 wind 3.0 30 > th dose independent rect. 14 1
29 67.71 radiation 40.0 30 < th dose independent rect. 14 1
32 67.72 temperature 30.0 30 < th dose independent rect. 14 1
35 67.74 wind 7.0 30 < th dose independent rect. 14 1
40 67.76 temperature 10.0 30 > th dose independent rect. 14 1
43 67.76 atmosphere 1010.0 30 < th dose independent rect. 14 1
46 67.76 precipitation 0.1 30 < th dose independent rect. 14 1
47 67.76 temperature 10.0 30 > th dose independent rect. 15 23
48 67.76 precipitation 0.1 30 < th dose dependent rect. 14 1
49 67.85 humidity 90.0 30 < th dose dependent rect. 14 1
52 68.03 atmosphere 1015.0 30 < th dose dependent rect. 14 1
53 68.06 wind 9.0 30 < th dose dependent rect. 14 1
54 68.07 humidity 50.0 30 > th dose dependent rect. 14 1
61 68.77 wind 9.0 30 < th dose independent rect. 15 23
119 69.84 radiation 30.0 30 > th dose independent rect. 14 19
182 71.36 radiation 40.0 30 < th dose dependent rect. 14 1
186 71.59 atmosphere 1015.0 1440 < th dose independent rect. 15 1
189 71.64 radiation 10.0 10 > th dose independent rect. 6 1
215 71.64 radiation 10.0 10 > th dose dependent rect. 6 1
283 71.96 wind 3.0 10 < th dose dependent rect. 6 1
287 72.02 atmosphere 1005.0 10 > th dose dependent rect. 6 1
292 72.16 humidity 80.0 30 > th dose dependent rect. 6 1
308 72.17 temperature 30.0 30 < th dose dependent rect. 14 1
314 72.27 temperature 30.0 30 < th dose dependent rect. 6 1
332 72.29 radiation 10.0 10 < th dose dependent rect. 6 1
347 72.53 wind 3.0 30 < th dose independent rect. 6 1
355 72.60 atmosphere 995.0 30 > th dose independent rect. 15 23
359 72.62 atmosphere 1000.0 30 > th dose independent rect. 7 23
370 72.68 wind 9.0 4320 < th dose independent rect. 7 1
376 72.70 temperature 25.0 10 > th dose independent rect. 6 1
378 72.70 temperature 10.0 1440 > th dose independent rect. 7 1
382 72.70 temperature 30.0 1440 < th dose independent rect. 7 1
386 72.70 humidity 80.0 30 > th dose independent rect. 6 1
387 72.70 humidity 50.0 1440 > th dose independent rect. 7 1
392 72.70 humidity 90.0 30 < th dose independent rect. 6 1
393 72.70 atmosphere 1005.0 30 > th dose independent rect. 6 1
394 72.70 atmosphere 995.0 1440 > th dose independent rect. 7 1
395 72.70 atmosphere 1015.0 1440 < th dose independent rect. 7 1
398 72.70 temperature 10.0 1440 > th dose independent rect. 8 23
402 72.71 wind 1.0 30 > th dose independent rect. 6 1
406 72.71 temperature 10.0 30 > th dose independent rect. 6 1
408 72.71 temperature 30.0 30 < th dose independent rect. 6 1
409 72.71 humidity 50.0 30 > th dose independent rect. 6 1
414 72.71 atmosphere 995.0 30 > th dose independent rect. 6 1
416 72.71 atmosphere 1015.0 30 < th dose independent rect. 6 1
417 72.71 radiation 20.0 30 < th dose independent rect. 6 1
420 72.71 precipitation 0.1 30 < th dose independent rect. 6 1
421 72.71 temperature 10.0 30 > th dose independent rect. 7 23
423 72.71 precipitation 0.1 30 < th dose dependent rect. 6 1
429 72.73 precipitation 0.1 30 < th dose independent rect. 7 23
448 72.73 precipitation 0.1 30 < th dose dependent rect. 7 23
471 72.77 wind 9.0 30 < th dose independent rect. 7 23
476 72.81 atmosphere 1010.0 10 < th dose independent rect. 15 23
480 72.84 temperature 10.0 30 > th dose dependent rect. 6 1
561 72.98 wind 1.0 30 > th dose independent rect. 7 23
581 73.02 radiation 30.0 10 < th dose dependent rect. 16 14
583 73.03 precipitation 0.1 30 < th dose independent rect. 15 23
587 73.03 precipitation 0.1 30 < th dose dependent rect. 15 23
588 73.04 atmosphere 1010.0 10 < th dose independent rect. 3 11
619 73.12 atmosphere 995.0 10 > th dose independent rect. 16 14
637 73.13 wind 9.0 10 < th dose independent rect. 16 14
648 73.16 precipitation 0.1 10 < th dose independent rect. 6 10
651 73.16 precipitation 0.1 10 < th dose dependent rect. 6 10
653 73.17 temperature 10.0 10 > th dose independent rect. 6 10
655 73.17 atmosphere 1015.0 10 < th dose independent rect. 6 10
656 73.17 temperature 10.0 10 > th dose independent rect. 16 14
657 73.17 radiation 30.0 10 < th dose independent rect. 16 14
659 73.17 humidity 50.0 30 > th dose independent rect. 7 23
664 73.19 temperature 30.0 10 < th dose independent rect. 6 10
670 73.20 humidity 90.0 10 < th dose dependent rect. 6 1
679 73.21 humidity 50.0 10 > th dose independent rect. 16 14
684 73.22 atmosphere 1010.0 10 < th dose independent rect. 24 13
685 73.22 precipitation 0.1 10 < th dose independent rect. 16 14
688 73.22 precipitation 0.1 10 < th dose dependent rect. 16 14
691 73.23 wind 1.0 90 > th dose independent rect. 5 10
713 73.25 wind 9.0 10 < th dose independent rect. 6 10
714 73.25 atmosphere 995.0 10 > th dose independent rect. 6 10
721 73.26 radiation 30.0 10 > th dose independent sin 12 NA
724 73.26 radiation 40.0 1440 < th dose independent rect. 7 1
731 73.27 temperature 10.0 1440 > th dose independent rect. 7 10
734 73.27 humidity 50.0 10 > th dose independent rect. 6 10
735 73.27 temperature 10.0 1440 > th dose independent rect. 17 14
739 73.27 radiation 40.0 1440 < th dose independent rect. 17 14
743 73.27 atmosphere 1015.0 30 < th dose dependent rect. 6 1
755 73.29 radiation 10.0 10 < th dose independent rect. 14 16
762 73.30 radiation 40.0 30 < th dose independent rect. 6 10
786 73.32 radiation 1.0 30 > th dose independent rect. 6 10
792 73.33 temperature 20.0 30 > th dose dependent rect. 2 1
794 73.34 temperature 20.0 30 > th dose independent rect. 2 1
795 73.34 atmosphere 1005.0 30 > th dose independent rect. 2 1
827 73.36 wind 3.0 30 < th dose dependent rect. 2 1
831 73.36 atmosphere 995.0 30 > th dose dependent rect. 2 1
835 73.37 wind 3.0 30 < th dose independent rect. 2 1
845 73.37 atmosphere 1005.0 30 > th dose dependent rect. 2 5
850 73.38 temperature 10.0 30 > th dose independent rect. 2 1
852 73.38 temperature 30.0 30 < th dose independent rect. 2 1
853 73.38 humidity 50.0 30 > th dose independent rect. 2 1
857 73.38 atmosphere 1010.0 30 < th dose independent rect. 2 1
859 73.38 radiation 1.0 30 < th dose independent rect. 2 1
864 73.38 precipitation 0.1 30 < th dose independent rect. 2 1
869 73.38 temperature 10.0 30 > th dose independent rect. 3 23
873 73.38 radiation 1.0 30 < th dose dependent rect. 2 1
878 73.38 precipitation 0.1 30 < th dose dependent rect. 2 1
880 73.38 radiation 30.0 10 < th dose dependent rect. 7 23
895 73.39 wind 1.0 10 > th dose independent rect. 16 14
896 73.39 temperature 30.0 10 < th dose independent rect. 16 14
901 73.39 humidity 50.0 30 > th dose dependent rect. 2 1
920 73.41 humidity 90.0 90 < th dose independent rect. 2 5
927 73.41 wind 9.0 720 < th dose dependent rect. 19 4
967 73.45 precipitation 0.1 720 < th dose independent rect. 19 12
974 73.45 precipitation 0.1 720 < th dose dependent rect. 19 12
985 73.46 atmosphere 1015.0 30 < th dose dependent rect. 2 1
987 73.46 humidity 50.0 10 > th dose dependent rect. 16 14