Os03g0356700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Villin 3.
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Os03g0356700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Villin 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.01 | 0.244 | 11.3 | 0.234 | 0.959 | -0.101 | -0.145 | 1.94 | 0.377 | 6.05 | 0.7467 | 1381 | -- | -- |
| 30.77 | 0.26 | 11.3 | 0.534 | 0.956 | -0.213 | -0.164 | -- | 0.463 | 5.04 | 0.7467 | 1381 | -- | -- |
| 27.06 | 0.242 | 11.3 | 0.232 | 0.958 | -0.101 | -- | 1.91 | 0.377 | 6.05 | 0.7277 | 1387 | -- | -- |
| 30.83 | 0.26 | 11.3 | 0.535 | 0.954 | -0.207 | -- | -- | 0.464 | 5.07 | 0.7277 | 1387 | -- | -- |
| 39.36 | 0.292 | 11.3 | 0.575 | -- | 1.15 | -- | 0.689 | 0.517 | -- | 2.704 | 764 | -- | -- |
| 31.78 | 0.264 | 11.3 | 0.55 | 0.952 | -- | -0.0768 | -- | 0.468 | 6.04 | -- | -- | -- | -- |
| 31.8 | 0.264 | 11.3 | 0.55 | 0.952 | -- | -- | -- | 0.468 | 6.05 | -- | -- | -- | -- |
| 39.07 | 0.291 | 11.3 | 0.613 | -- | 1.11 | -- | -- | 0.521 | -- | 4.035 | 746 | -- | -- |
| 32.72 | 0.266 | 11.3 | -- | 0.905 | -0.471 | -- | -- | 0.382 | 6.08 | 0.001729 | 20245 | -- | -- |
| 78.76 | 0.415 | 11.3 | 0.577 | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
| 39.76 | 0.295 | 11.3 | -- | 0.96 | -- | -- | -- | 0.407 | 6.02 | -- | -- | -- | -- |
| 48.04 | 0.323 | 11.3 | -- | -- | 1.07 | -- | -- | 0.461 | -- | 10 | 732 | -- | -- |
| 87.55 | 0.437 | 11.3 | -- | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 2 | 25.06 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 10 |
| 18 | 25.47 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 30 | 25.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 44 | 25.72 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 77 | 25.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 94 | 26.03 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 100 | 26.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 104 | 26.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 177 | 26.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 185 | 26.30 | temperature | 15 | 10 | > th | dose dependent | sin | 11 | NA |
| 202 | 26.38 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 18 |
| 206 | 26.39 | temperature | 15 | 720 | > th | dose dependent | sin | 18 | NA |
| 226 | 26.45 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 236 | 26.49 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 248 | 26.51 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 7 |
| 257 | 26.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 261 | 26.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 268 | 26.55 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 289 | 26.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 343 | 26.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 428 | 26.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 460 | 26.91 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 467 | 26.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 470 | 26.92 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 480 | 26.92 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 15 |
| 574 | 27.05 | humidity | 90 | 720 | < th | dose independent | rect. | 11 | 12 |
| 577 | 27.05 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 605 | 27.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 610 | 27.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 618 | 27.09 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |
| 637 | 27.12 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 642 | 27.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 646 | 27.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 662 | 27.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 666 | 27.14 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 21 |
| 698 | 27.16 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 737 | 27.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 756 | 27.19 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 769 | 27.20 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 797 | 27.21 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 830 | 27.24 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 846 | 27.25 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 847 | 27.25 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 7 |
| 896 | 27.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 904 | 27.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 947 | 27.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |