Os03g0356300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L6 family protein.
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Os03g0356300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L6 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.63 | 0.559 | 12.6 | -0.242 | 2.13 | -1.2 | 0.631 | -0.231 | -0.726 | 20.9 | 20.2 | 223 | -- | -- |
| 141.21 | 0.553 | 12.6 | -0.211 | 2.12 | -1.12 | 0.611 | -- | -0.722 | 20.9 | 20.43 | 208 | -- | -- |
| 142.21 | 0.555 | 12.6 | -0.26 | 2.12 | -1.11 | -- | -0.037 | -0.715 | 20.9 | 20.4 | 208 | -- | -- |
| 142.16 | 0.555 | 12.6 | -0.257 | 2.11 | -1.11 | -- | -- | -0.719 | 20.9 | 20.47 | 197 | -- | -- |
| 380.03 | 0.908 | 12.5 | -0.242 | -- | -1.28 | -- | 0.0148 | -0.688 | -- | 20.41 | 72 | -- | -- |
| 184.9 | 0.637 | 12.7 | -0.581 | 2.14 | -- | 0.444 | -- | -0.93 | 21.3 | -- | -- | -- | -- |
| 185.6 | 0.638 | 12.7 | -0.597 | 2.14 | -- | -- | -- | -0.931 | 21.3 | -- | -- | -- | -- |
| 378.68 | 0.91 | 12.5 | -0.283 | -- | -1.26 | -- | -- | -0.703 | -- | 20.5 | 66 | -- | -- |
| 143.8 | 0.559 | 12.6 | -- | 2.12 | -1.17 | -- | -- | -0.677 | 20.9 | 20.42 | 208 | -- | -- |
| 452.77 | 0.994 | 12.6 | -0.588 | -- | -- | -- | -- | -0.94 | -- | -- | -- | -- | -- |
| 195 | 0.653 | 12.6 | -- | 2.14 | -- | -- | -- | -0.864 | 21.2 | -- | -- | -- | -- |
| 380.73 | 0.912 | 12.5 | -- | -- | -1.29 | -- | -- | -0.665 | -- | 20.5 | 66 | -- | -- |
| 461.89 | 1 | 12.6 | -- | -- | -- | -- | -- | -0.875 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.49 | temperature | 20 | 90 | > th | dose independent | sin | 5 | NA |
| 2 | 135.70 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 3 | 135.80 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 4 | 135.95 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 13 |
| 8 | 136.39 | temperature | 25 | 90 | < th | dose dependent | sin | 6 | NA |
| 9 | 136.42 | temperature | 20 | 90 | < th | dose independent | sin | 5 | NA |
| 10 | 136.46 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 15 |
| 28 | 137.58 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 50 | 139.03 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 56 | 139.32 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 12 |
| 75 | 139.72 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 77 | 139.74 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 179 | 141.87 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 186 | 141.93 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 13 |
| 244 | 142.83 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 254 | 143.09 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 277 | 143.56 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 10 |
| 278 | 143.56 | temperature | 15 | 10 | > th | dose dependent | sin | 7 | NA |
| 281 | 143.65 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 312 | 144.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 318 | 144.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 370 | 144.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 459 | 145.65 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 504 | 146.07 | temperature | 20 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 653 | 147.24 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 741 | 147.87 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 17 |
| 829 | 148.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 970 | 149.18 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 997 | 149.30 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 1000 | 149.32 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |