Os03g0353500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0353500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.66 | 0.214 | 12.1 | 0.0507 | 0.528 | -0.0574 | 0.038 | -3.5 | -0.0414 | 19.5 | 30.31 | 1200 | -- | -- |
| 21.21 | 0.214 | 12 | 0.65 | 0.516 | -0.458 | 0.0418 | -- | -0.0454 | 19.6 | 30.45 | 1202 | -- | -- |
| 20.66 | 0.212 | 12.1 | 0.0472 | 0.53 | -0.0583 | -- | -3.5 | -0.0429 | 19.5 | 30.23 | 1193 | -- | -- |
| 21.17 | 0.214 | 12 | 0.63 | 0.535 | -0.452 | -- | -- | -0.0411 | 19.5 | 30.13 | 1203 | -- | -- |
| 35.32 | 0.277 | 12.1 | -0.00518 | -- | -0.0366 | -- | -3.55 | -0.0532 | -- | 29.8 | 1285 | -- | -- |
| 30.92 | 0.261 | 12 | 0.515 | 0.535 | -- | 0.0681 | -- | 0.0452 | 19 | -- | -- | -- | -- |
| 30.93 | 0.26 | 12 | 0.514 | 0.535 | -- | -- | -- | 0.0453 | 19 | -- | -- | -- | -- |
| 36.03 | 0.28 | 12 | 0.641 | -- | -0.471 | -- | -- | 0.011 | -- | 27.1 | 1354 | -- | -- |
| 31.21 | 0.26 | 12 | -- | 0.528 | -0.366 | -- | -- | -0.0907 | 19.5 | 30.78 | 1181 | -- | -- |
| 46 | 0.317 | 12 | 0.503 | -- | -- | -- | -- | 0.0356 | -- | -- | -- | -- | -- |
| 37.89 | 0.288 | 12 | -- | 0.53 | -- | -- | -- | -0.0119 | 19.1 | -- | -- | -- | -- |
| 46.09 | 0.316 | 12 | -- | -- | -0.356 | -- | -- | -0.0989 | -- | 30.73 | 1277 | -- | -- |
| 52.67 | 0.339 | 12 | -- | -- | -- | -- | -- | -0.0202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.44 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 21.45 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 3 | 21.46 | temperature | 30 | 1440 | > th | dose dependent | sin | 19 | NA |
| 6 | 21.46 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 7 | 21.46 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 215 | 21.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 236 | 21.54 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 243 | 21.55 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 266 | 21.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 269 | 21.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 318 | 21.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 330 | 21.71 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 360 | 21.78 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 363 | 21.79 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 372 | 21.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 397 | 21.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 519 | 21.98 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 562 | 22.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 567 | 22.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 598 | 22.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 632 | 22.03 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 750 | 22.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 777 | 22.05 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 828 | 22.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 885 | 22.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 940 | 22.08 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |
| 972 | 22.09 | temperature | 30 | 1440 | > th | dose independent | sin | 0 | NA |
| 981 | 22.09 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 990 | 22.10 | temperature | 30 | 1440 | > th | dose independent | sin | 22 | NA |