Os03g0352200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAC3/GANP family protein.
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Os03g0352200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAC3/GANP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.2 | 0.319 | 10.2 | -1.72 | 0.848 | -0.918 | -1.28 | 0.433 | -0.0418 | 10.1 | 25 | 89 | -- | -- |
| 46.44 | 0.317 | 10.2 | -1.67 | 0.84 | -0.958 | -1.34 | -- | -0.0197 | 10.2 | 24.64 | 70 | -- | -- |
| 50.96 | 0.335 | 10.3 | -1.91 | 0.827 | -0.89 | -- | 1.28 | -0.102 | 9.51 | 26.26 | 81 | -- | -- |
| 53.42 | 0.34 | 10.2 | -1.72 | 0.853 | -1.01 | -- | -- | -0.0407 | 9.66 | 25.07 | 76 | -- | -- |
| 88.96 | 0.442 | 10.3 | -1.97 | -- | -1.24 | -- | 1.12 | -0.166 | -- | 26.26 | 81 | -- | -- |
| 59.63 | 0.362 | 10.2 | -1.42 | 0.934 | -- | -1.46 | -- | 0.158 | 10.7 | -- | -- | -- | -- |
| 68.06 | 0.386 | 10.2 | -1.48 | 0.951 | -- | -- | -- | 0.152 | 10.3 | -- | -- | -- | -- |
| 91.11 | 0.447 | 10.3 | -1.8 | -- | -1.35 | -- | -- | -0.114 | -- | 25.1 | 48 | -- | -- |
| 124.04 | 0.522 | 10.2 | -- | 0.909 | -0.344 | -- | -- | 0.256 | 10.2 | 25.2 | 36 | -- | -- |
| 123.2 | 0.519 | 10.2 | -1.5 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 125.99 | 0.525 | 10.2 | -- | 0.959 | -- | -- | -- | 0.317 | 10.5 | -- | -- | -- | -- |
| 169.82 | 0.609 | 10.2 | -- | -- | -0.781 | -- | -- | 0.169 | -- | 26.4 | 9 | -- | -- |
| 182.36 | 0.63 | 10.2 | -- | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 3 | 44.73 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 4 | 44.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 5 | 44.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 13 | 45.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 32 | 45.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 53 | 45.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 54 | 45.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 58 | 45.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 76 | 46.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 88 | 46.20 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 90 | 46.21 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 18 |
| 93 | 46.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 105 | 46.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 110 | 46.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 113 | 46.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 116 | 46.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 117 | 46.36 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 126 | 46.39 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 135 | 46.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 138 | 46.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 140 | 46.46 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 16 |
| 141 | 46.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 168 | 46.61 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 18 |
| 233 | 47.02 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 19 |
| 264 | 47.16 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 269 | 47.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 270 | 47.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 275 | 47.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 314 | 47.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 15 |
| 351 | 47.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 374 | 47.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 454 | 47.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 17 |
| 481 | 47.82 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 7 |
| 498 | 47.88 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 561 | 48.03 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 650 | 48.26 | humidity | 90 | 90 | < th | dose independent | rect. | 9 | 7 |
| 652 | 48.26 | temperature | 25 | 10 | < th | dose dependent | sin | 20 | NA |
| 716 | 48.40 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 812 | 48.58 | temperature | 20 | 30 | > th | dose independent | sin | 6 | NA |
| 847 | 48.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 872 | 48.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 905 | 48.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 922 | 48.76 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 11 |
| 940 | 48.79 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 951 | 48.80 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 21 |
| 956 | 48.81 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 7 |
| 959 | 48.81 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |