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Os03g0351700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.29 (0.0745) R2 : 0.515
β1 : 3.96 (0.215) R2dD : 1.07 R2D : -0.425
β2 : 0.797 (0.0851) R2dC : 0.0959 R2C : -0.381
β3 : 65 (6.07) R2dE : 37.3 R2E : -40.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 137 (12.7) R2dD*E : 36.8 R2D*E : -34.1
γ1 : 0.368 (0.075) R2dN8 : 0.0362 R2N8 : -0.625
σ : 0.65
deviance : 194.53
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C
peak time of C : 1.93
E
wheather : radiation
threshold : 0.9343
memory length : 680
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.99
open length of G : 1.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.78 0.647 8.29 3.95 0.804 65.1 -1.14 136 0.377 1.76 1.045 677 9.99 1.07
4818.96 3.23 8.46 6.81 1.58 65.2 0.0794 -- 0.331 0.722 5.495 115 10.6 0.383
194.53 0.65 8.29 3.96 0.797 65 -- 137 0.368 1.93 0.9343 680 9.99 1.08
2773.85 2.45 7.57 4.66 0.804 51.8 -- -- 1 3.31 6.896 99 10.7 0.068
232.25 0.71 8.29 3.98 -- 64.9 -- 137 0.388 -- 0.9998 677 9.99 1.07
237.4 0.722 7.59 2.12 0.727 -- -0.954 -- 0.305 1.03 -- -- -- --
240.91 0.727 7.59 2.16 0.736 -- -- -- 0.308 1.42 -- -- -- --
266.6 0.764 7.57 2.22 -- 2.76 -- -- 0.336 -- 0.0003336 171 11.8 1.39
1000.99 1.47 8.83 -- 0.414 10.8 -- -- -0.965 6.14 5.432 84 10.7 0.0487
274.18 0.774 7.58 2.19 -- -- -- -- 0.324 -- -- -- -- --
363.52 0.892 7.64 -- 0.774 -- -- -- 0.068 1.52 -- -- -- --
391.28 0.921 7.66 -- -- 2.05 -- -- 0.118 -- 1.03 204 12.3 4.73
400.22 0.934 7.63 -- -- -- -- -- 0.0813 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.06 radiation 1 720 < th dose independent rect. 10 1
2 193.06 radiation 1 720 < th dose dependent rect. 10 1
3 193.56 radiation 1 720 < th dose independent rect. 9 3
4 193.56 radiation 1 720 < th dose dependent rect. 9 3
15 198.92 radiation 1 720 < th dose independent rect. 8 7
16 198.92 radiation 1 720 < th dose dependent rect. 8 7
68 204.32 humidity 90 720 > th dose independent rect. 11 2
72 204.36 humidity 90 720 > th dose dependent rect. 12 1
100 206.43 radiation 1 1440 > th dose independent rect. 11 1
125 208.88 radiation 1 90 < th dose dependent sin 23 NA
126 208.90 wind 1 1440 < th dose independent rect. 6 1
148 209.55 radiation 1 10 < th dose dependent sin 23 NA
158 209.89 humidity 80 720 < th dose independent rect. 20 20
172 210.65 radiation 1 90 < th dose independent sin 23 NA
175 210.76 wind 1 1440 > th dose independent rect. 6 1
188 211.06 radiation 10 90 > th dose independent rect. 9 23
202 211.20 radiation 20 10 < th dose dependent rect. 17 23
207 211.37 radiation 20 30 < th dose dependent rect. 19 23
209 211.41 temperature 30 4320 > th dose dependent rect. 8 1
225 211.65 radiation 1 10 < th dose dependent rect. 6 12
229 211.73 radiation 1 10 < th dose dependent rect. 11 7
242 211.82 radiation 1 720 > th dose independent rect. 9 8
243 211.82 humidity 80 720 > th dose independent rect. 9 19
244 211.86 humidity 80 720 > th dose independent rect. 11 17
252 212.00 radiation 10 720 > th dose independent rect. 11 5
262 212.14 radiation 1 90 > th dose independent sin 23 NA
268 212.26 radiation 20 270 < th dose dependent rect. 11 20
281 212.45 radiation 1 10 < th dose independent sin 23 NA
287 212.47 humidity 80 720 > th dose independent rect. 19 22
288 212.51 radiation 20 720 < th dose dependent rect. 11 16
298 212.72 radiation 20 90 < th dose dependent rect. 11 23
299 212.73 humidity 80 720 < th dose independent rect. 11 4
301 212.76 humidity 80 720 > th dose independent rect. 6 23
337 213.25 humidity 80 270 > th dose independent rect. 11 6
340 213.30 radiation 1 1440 > th dose independent rect. 9 3
351 213.42 humidity 80 720 > th dose independent rect. 11 23
357 213.45 humidity 80 720 < th dose independent rect. 9 23
388 213.63 radiation 20 30 < th dose dependent no NA NA
392 213.66 radiation 20 30 < th dose dependent rect. 15 23
399 213.73 humidity 80 720 < th dose independent rect. 11 23
400 213.73 radiation 20 30 < th dose dependent rect. 13 23
401 213.74 humidity 80 720 < th dose independent rect. 2 15
409 213.77 humidity 80 720 < th dose independent rect. 11 21
410 213.77 radiation 20 10 < th dose dependent rect. 1 23
411 213.78 humidity 80 720 > th dose independent rect. 23 23
414 213.80 humidity 80 720 < th dose independent rect. 2 21
450 213.94 humidity 80 720 < th dose independent rect. 4 19
457 213.97 humidity 80 720 < th dose independent rect. 6 21
460 213.98 radiation 1 10 < th dose dependent rect. 4 14
466 214.00 radiation 10 90 > th dose independent rect. 11 21
469 214.02 humidity 80 720 > th dose independent no NA NA
470 214.03 radiation 20 30 < th dose dependent rect. 9 23
472 214.04 temperature 25 270 < th dose independent rect. 12 6
499 214.12 radiation 10 30 > th dose independent rect. 7 11
514 214.13 wind 1 1440 < th dose dependent rect. 6 1
533 214.20 humidity 80 720 < th dose independent rect. 9 7
547 214.25 humidity 80 720 < th dose independent sin 23 NA
548 214.25 humidity 80 720 < th dose independent no NA NA
561 214.32 wind 1 1440 < th dose independent rect. 6 4
567 214.37 humidity 60 720 > th dose dependent rect. 11 18
572 214.39 radiation 1 1440 > th dose independent rect. 9 1
577 214.41 radiation 1 720 < th dose independent rect. 11 16
585 214.46 radiation 20 10 < th dose independent rect. 17 23
605 214.54 humidity 80 720 < th dose independent rect. 9 18
611 214.59 humidity 80 720 > th dose independent rect. 23 18
619 214.63 humidity 80 720 < th dose independent rect. 9 15
652 214.75 wind 1 1440 > th dose independent rect. 6 4
659 214.76 humidity 60 720 > th dose dependent rect. 13 16
671 214.79 humidity 60 30 > th dose dependent rect. 13 22
686 214.87 radiation 10 30 > th dose independent no NA NA
773 214.89 humidity 50 720 > th dose dependent rect. 15 14
810 214.99 humidity 80 720 < th dose independent rect. 11 13
822 215.02 humidity 80 720 < th dose independent rect. 11 16
841 215.08 humidity 80 720 > th dose independent rect. 1 16
896 215.25 radiation 20 30 < th dose dependent sin 21 NA
922 215.33 radiation 1 1440 > th dose independent rect. 13 1
937 215.37 radiation 20 30 < th dose dependent rect. 21 23
1000 215.58 radiation 1 270 < th dose independent rect. 11 19