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Os03g0351200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0218) R2 : 0.676
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.49 (0.0518) R2dC : 0.593 R2C : 0.574
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.482 (0.0458) R2dN8 : 0.102 R2N8 : 0.0826
σ : 0.41
deviance : 76.94
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_____
C
peak time of C : 12
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.75 0.375 13.5 0.305 1.5 -0.0273 -0.502 2.18 -0.356 12 20.23 1611 -- --
68.15 0.384 13.5 0.164 1.45 -0.545 -0.567 -- -0.406 12 10.21 47520 -- --
64.79 0.375 13.5 0.279 1.49 -0.000396 -- 2.22 -0.358 11.9 20.29 1417 -- --
67.93 0.384 13.5 0.156 1.48 -0.595 -- -- -0.397 12 10.24 43667 -- --
198.83 0.657 13.5 0.481 -- -0.479 -- 1.96 -0.233 -- 19.6 2413 -- --
74.6 0.405 13.5 -0.203 1.49 -- -0.488 -- -0.505 12 -- -- -- --
75.63 0.407 13.5 -0.223 1.49 -- -- -- -0.507 12 -- -- -- --
204.95 0.667 13.5 0.0372 -- -0.499 -- -- -0.463 -- 19.4 2360 -- --
68.52 0.386 13.5 -- 1.47 -0.544 -- -- -0.409 12 10.3 43625 -- --
215.29 0.686 13.6 -0.269 -- -- -- -- -0.528 -- -- -- -- --
76.94 0.41 13.5 -- 1.49 -- -- -- -0.482 12 -- -- -- --
200.06 0.659 13.5 -- -- -0.783 -- -- -0.377 -- 19.5 907 -- --
217.2 0.688 13.6 -- -- -- -- -- -0.498 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.50 radiation 20 1440 < th dose independent rect. 11 2
2 60.77 radiation 20 1440 < th dose dependent rect. 11 1
4 61.15 temperature 20 270 > th dose independent rect. 19 8
5 61.33 radiation 10 4320 < th dose dependent rect. 24 5
10 61.57 radiation 1 1440 < th dose independent rect. 13 1
11 61.57 radiation 1 1440 < th dose dependent rect. 13 1
12 61.60 radiation 1 1440 > th dose independent rect. 10 5
13 61.65 radiation 1 1440 > th dose independent rect. 13 1
17 61.82 temperature 20 270 > th dose independent sin 12 NA
19 61.84 radiation 10 720 < th dose independent rect. 14 14
25 61.94 radiation 10 720 < th dose independent rect. 14 7
27 62.03 radiation 1 1440 < th dose independent rect. 11 4
28 62.03 radiation 1 1440 < th dose dependent rect. 11 4
30 62.04 radiation 30 14400 < th dose dependent rect. 23 6
50 62.37 temperature 20 720 > th dose independent rect. 13 12
51 62.38 temperature 20 720 > th dose independent rect. 14 10
58 62.52 temperature 20 1440 > th dose independent rect. 13 15
68 62.62 wind 9 43200 > th dose dependent rect. 18 13
74 62.66 temperature 20 1440 > th dose independent rect. 18 9
77 62.69 temperature 20 4320 > th dose independent rect. 18 6
79 62.70 temperature 20 1440 < th dose independent rect. 13 15
81 62.72 wind 9 43200 > th dose independent rect. 18 13
88 62.76 radiation 1 4320 < th dose independent rect. 24 5
107 62.83 atmosphere 1005 14400 < th dose independent rect. 21 1
113 62.85 temperature 20 1440 > th dose independent sin 15 NA
122 62.86 wind 9 43200 > th dose independent rect. 17 16
125 62.87 temperature 20 1440 < th dose independent rect. 18 9
133 62.90 temperature 20 4320 < th dose independent rect. 18 6
139 62.92 temperature 20 1440 > th dose independent rect. 20 6
157 62.98 wind 9 43200 < th dose independent rect. 18 13
163 63.00 temperature 20 1440 > th dose independent rect. 13 18
174 63.02 temperature 20 4320 < th dose independent rect. 16 9
178 63.03 temperature 20 1440 < th dose independent sin 14 NA
190 63.05 wind 9 43200 < th dose independent rect. 18 11
213 63.12 wind 9 43200 < th dose independent rect. 24 3
217 63.12 wind 9 43200 < th dose independent rect. 17 16
218 63.12 temperature 20 1440 < th dose independent rect. 13 18
227 63.14 wind 9 43200 > th dose dependent rect. 20 11
279 63.26 wind 9 43200 > th dose independent rect. 20 11
297 63.30 temperature 20 4320 < th dose independent rect. 20 1
309 63.31 atmosphere 995 43200 < th dose dependent rect. 12 13
311 63.32 wind 9 43200 < th dose independent rect. 20 11
322 63.35 atmosphere 995 43200 > th dose independent rect. 12 1
349 63.40 wind 9 43200 > th dose independent rect. 20 9
350 63.40 wind 9 43200 < th dose independent rect. 20 9
357 63.41 wind 9 43200 > th dose dependent rect. 20 9
373 63.44 wind 9 43200 > th dose dependent sin 12 NA
417 63.51 wind 9 43200 > th dose independent sin 11 NA
449 63.55 atmosphere 995 43200 > th dose independent rect. 2 13
474 63.59 atmosphere 995 43200 < th dose dependent rect. 14 1
494 63.62 atmosphere 995 43200 < th dose dependent sin 17 NA
496 63.62 radiation 10 90 < th dose dependent rect. 1 22
497 63.63 wind 7 14400 > th dose independent rect. 20 6
501 63.64 wind 9 43200 < th dose independent sin 11 NA
512 63.64 radiation 10 10 < th dose dependent rect. 1 22
519 63.65 atmosphere 995 43200 < th dose independent rect. 4 11
527 63.68 temperature 20 1440 > th dose independent rect. 23 1
528 63.68 atmosphere 1005 14400 > th dose independent rect. 21 1
544 63.70 humidity 70 14400 > th dose independent rect. 21 7
552 63.71 wind 7 14400 < th dose independent rect. 8 1
572 63.72 radiation 10 720 < th dose dependent rect. 14 14
573 63.73 atmosphere 995 43200 < th dose independent sin 4 NA
616 63.78 atmosphere 995 43200 > th dose independent sin 4 NA
633 63.79 atmosphere 995 43200 < th dose dependent rect. 12 4
649 63.81 temperature 20 1440 > th dose independent rect. 5 23
659 63.82 atmosphere 995 43200 < th dose independent rect. 2 14
672 63.83 atmosphere 1000 10 > th dose independent rect. 1 22
684 63.85 temperature 20 1440 > th dose independent rect. 6 1
711 63.87 temperature 20 1440 > th dose independent rect. 18 22
727 63.89 atmosphere 995 43200 < th dose independent rect. 9 6
754 63.91 wind 7 14400 > th dose independent rect. 8 1
762 63.91 temperature 20 270 > th dose independent rect. 19 20
767 63.92 temperature 20 1440 > th dose independent rect. 20 20
824 63.97 temperature 20 1440 < th dose independent rect. 5 23
841 64.00 wind 7 14400 < th dose independent rect. 21 1
872 64.02 temperature 20 4320 > th dose independent rect. 18 1
887 64.02 temperature 20 1440 < th dose independent rect. 20 21
888 64.02 temperature 20 1440 < th dose independent rect. 18 22
912 64.04 wind 7 43200 > th dose dependent rect. 19 1
918 64.05 temperature 20 1440 > th dose independent no NA NA