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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0349800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0368) R2 : 0.456
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.09 (0.115) R2dE : 0.394 R2E : 0.424
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.417 (0.0787) R2dN8 : 0.0315 R2N8 : 0.0617
σ : 0.687
deviance : 217.81
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 59.42
memory length : 21730
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.3 0.66 3.53 -2.2 0.351 -0.555 -1.16 3.88 -0.827 7.75 39.99 4340 -- --
222.01 0.699 3.59 -2.19 0.306 -0.518 -1.38 -- -0.829 6.69 39.99 4340 -- --
201.07 0.66 3.54 -2.21 0.35 -0.557 -- 3.88 -0.82 7.76 39.99 4364 -- --
224.36 0.698 3.54 -1.99 0.384 -0.697 -- -- -0.831 7.84 40 10256 -- --
207.58 0.671 3.53 -2.2 -- -0.567 -- 3.96 -0.807 -- 39.99 4392 -- --
230.76 0.712 3.59 -2.2 0.366 -- -1.16 -- -0.839 7.82 -- -- -- --
234.11 0.717 3.59 -2.23 0.37 -- -- -- -0.835 8.82 -- -- -- --
206.33 0.669 3.57 -1.45 -- -1.61 -- -- -0.691 -- 58.24 10159 -- --
292.17 0.796 3.54 -- 0.416 -1.24 -- -- -0.734 7.67 39.4 25381 -- --
241.92 0.727 3.6 -2.23 -- -- -- -- -0.832 -- -- -- -- --
364.73 0.893 3.54 -- 0.368 -- -- -- -0.587 9.28 -- -- -- --
217.81 0.687 3.54 -- -- -2.09 -- -- -0.417 -- 59.42 21730 -- --
372.61 0.901 3.55 -- -- -- -- -- -0.585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.26 humidity 50 43200 > th dose independent rect. 8 1
2 181.42 humidity 50 43200 > th dose independent rect. 4 5
8 181.80 humidity 50 43200 > th dose independent rect. 22 11
10 182.44 humidity 50 43200 < th dose independent rect. 8 1
13 184.46 humidity 50 43200 < th dose independent rect. 4 5
22 185.60 humidity 50 43200 > th dose independent rect. 18 15
25 186.80 humidity 50 43200 < th dose independent rect. 18 15
27 188.35 temperature 15 14400 < th dose dependent rect. 20 3
28 188.35 temperature 15 14400 < th dose dependent rect. 7 18
29 188.36 temperature 15 14400 < th dose dependent rect. 16 8
30 188.37 temperature 15 14400 < th dose dependent sin 18 NA
37 188.55 temperature 15 14400 < th dose dependent rect. 10 14
39 188.56 temperature 15 14400 < th dose independent rect. 10 6
48 188.74 temperature 15 43200 < th dose independent rect. 6 1
52 188.79 temperature 15 43200 < th dose dependent rect. 19 1
53 188.80 humidity 50 43200 < th dose dependent rect. 8 1
59 188.93 temperature 15 14400 < th dose independent rect. 11 4
85 189.25 temperature 15 43200 < th dose independent rect. 5 4
97 189.34 temperature 15 14400 > th dose independent rect. 10 6
98 189.34 radiation 40 14400 < th dose independent rect. 17 15
105 189.38 temperature 15 14400 < th dose dependent sin 1 NA
120 189.47 temperature 15 43200 < th dose independent rect. 13 2
122 189.48 humidity 50 43200 < th dose dependent rect. 7 3
123 189.48 temperature 15 43200 < th dose dependent rect. 4 6
130 189.54 temperature 15 43200 < th dose dependent rect. 5 4
149 189.63 temperature 15 43200 > th dose independent rect. 13 1
175 189.75 temperature 15 14400 < th dose independent rect. 21 2
189 189.80 temperature 15 43200 < th dose independent rect. 13 8
191 189.81 temperature 15 43200 < th dose independent rect. 13 6
193 189.81 temperature 15 43200 < th dose independent rect. 13 11
195 189.82 temperature 15 43200 > th dose independent rect. 17 1
199 189.84 temperature 15 43200 < th dose independent rect. 17 1
202 189.85 temperature 15 43200 > th dose independent rect. 13 3
204 189.85 temperature 15 43200 > th dose independent rect. 13 8
207 189.86 radiation 10 4320 < th dose independent rect. 18 1
209 189.87 temperature 15 43200 > th dose independent rect. 13 6
241 189.96 temperature 15 14400 < th dose dependent rect. 10 3
258 190.01 temperature 15 43200 > th dose independent rect. 16 5
281 190.05 radiation 40 14400 < th dose independent rect. 5 3
298 190.08 temperature 15 43200 < th dose independent rect. 5 16
310 190.11 radiation 40 14400 < th dose independent rect. 24 8
323 190.14 temperature 15 14400 > th dose independent rect. 21 2
325 190.14 radiation 10 4320 < th dose independent rect. 18 8
371 190.23 temperature 15 43200 > th dose independent rect. 6 2
378 190.24 temperature 15 43200 > th dose independent rect. 19 1
426 190.35 temperature 15 43200 < th dose independent rect. 19 1
442 190.37 temperature 15 43200 < th dose independent sin 20 NA
483 190.49 temperature 15 14400 < th dose independent rect. 6 9
512 190.57 temperature 15 43200 > th dose independent sin 20 NA
519 190.58 radiation 40 14400 < th dose independent rect. 3 5
523 190.58 humidity 60 43200 < th dose dependent rect. 24 9
525 190.59 temperature 15 43200 > th dose independent rect. 6 15
527 190.59 humidity 60 43200 < th dose dependent rect. 2 7
551 190.63 temperature 15 43200 > th dose independent rect. 5 18
600 190.74 temperature 15 43200 < th dose dependent rect. 9 1
636 190.81 temperature 15 43200 < th dose dependent rect. 12 22
645 190.83 temperature 15 43200 < th dose independent rect. 12 21
666 190.86 temperature 15 43200 < th dose dependent no NA NA
694 190.91 radiation 1 4320 > th dose dependent rect. 18 1
707 190.91 temperature 15 43200 < th dose dependent rect. 15 23
727 190.94 humidity 50 43200 < th dose dependent rect. 21 13
762 191.00 radiation 1 14400 < th dose dependent rect. 8 4
878 191.18 radiation 1 14400 < th dose independent rect. 10 1
884 191.18 radiation 1 14400 < th dose dependent rect. 10 1
904 191.21 humidity 50 43200 < th dose dependent rect. 16 20
919 191.25 temperature 15 43200 < th dose independent rect. 22 23
945 191.30 temperature 15 43200 < th dose independent no NA NA
955 191.31 radiation 40 4320 < th dose independent rect. 13 6
958 191.31 radiation 40 4320 < th dose independent rect. 13 18
967 191.33 radiation 40 4320 < th dose independent rect. 13 4
972 191.33 radiation 40 4320 < th dose independent rect. 13 12