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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0349700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.025) R2 : 0.00285
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.06 (0.0525) R2dN8 : 0.00369 R2N8 : 0.00285
σ : 0.47
deviance : 101.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.37 0.459 3.17 0.84 0.155 -0.883 0.239 4.8 0.0316 4.58 30 4135 -- --
95.69 0.456 3.24 0.138 0.172 -0.344 0.16 -- 0.149 4.42 27.09 6860 -- --
95.5 0.455 3.17 0.842 0.156 -0.887 -- 4.84 0.0305 4.17 30.06 4103 -- --
95.22 0.454 3.22 0.154 0.164 -0.374 -- -- 0.179 4.28 25.2 9759 -- --
96.81 0.458 3.17 0.876 -- -0.891 -- 5.01 0.0385 -- 30 4136 -- --
100.01 0.469 3.25 -0.037 0.147 -- 0.26 -- 0.054 5.25 -- -- -- --
100.17 0.469 3.25 -0.0372 0.148 -- -- -- 0.0527 4.85 -- -- -- --
96.56 0.458 3.23 0.153 -- -0.369 -- -- 0.181 -- 25.15 9023 -- --
95.78 0.456 3.23 -- 0.173 -0.352 -- -- 0.15 4.29 25.2 9711 -- --
101.33 0.47 3.25 -0.0316 -- -- -- -- 0.0565 -- -- -- -- --
100.21 0.468 3.25 -- 0.148 -- -- -- 0.0568 4.86 -- -- -- --
96.87 0.458 3.23 -- -- -0.325 -- -- 0.176 -- 28.54 9128 -- --
101.36 0.47 3.25 -- -- -- -- -- 0.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.55 wind 1.0 270 < th dose dependent rect. 22 1
3 89.39 wind 1.0 270 < th dose independent rect. 22 1
4 89.63 humidity 90.0 30 > th dose dependent rect. 8 4
6 89.70 humidity 90.0 10 > th dose independent rect. 8 4
30 90.41 wind 1.0 270 < th dose dependent rect. 17 6
57 91.14 humidity 80.0 30 < th dose independent rect. 22 2
62 91.18 humidity 80.0 30 < th dose dependent rect. 23 1
65 91.19 humidity 80.0 720 < th dose independent rect. 24 1
67 91.19 humidity 80.0 720 < th dose dependent rect. 24 1
83 91.38 humidity 80.0 10 < th dose independent rect. 24 4
88 91.39 humidity 80.0 10 < th dose dependent rect. 24 4
129 92.41 radiation 10.0 90 < th dose independent rect. 8 1
132 92.60 wind 1.0 30 < th dose dependent rect. 23 4
141 92.77 wind 1.0 30 < th dose dependent rect. 21 6
161 93.18 wind 1.0 90 < th dose dependent rect. 8 1
165 93.24 wind 1.0 270 < th dose independent rect. 17 6
166 93.25 radiation 10.0 90 < th dose dependent rect. 8 1
174 93.48 wind 1.0 30 < th dose dependent rect. 10 17
192 93.84 wind 1.0 30 < th dose dependent rect. 23 1
198 93.94 wind 1.0 90 < th dose independent rect. 8 1
242 94.30 radiation 1.0 270 < th dose dependent rect. 7 6
258 94.43 precipitation 0.1 270 > th dose independent rect. 6 1
260 94.43 precipitation 0.1 270 > th dose dependent rect. 6 1
264 94.46 radiation 1.0 270 < th dose independent rect. 7 6
274 94.52 temperature 20.0 14400 > th dose independent rect. 21 2
287 94.59 temperature 20.0 14400 < th dose independent rect. 21 2
299 94.66 wind 5.0 43200 < th dose independent rect. 19 2
303 94.68 precipitation 0.1 270 > th dose independent rect. 6 3
305 94.68 precipitation 0.1 270 > th dose dependent rect. 6 3
306 94.69 precipitation 0.1 270 > th dose independent rect. 8 1
309 94.69 precipitation 0.1 270 > th dose dependent rect. 8 1
315 94.71 wind 5.0 4320 > th dose dependent rect. 19 1
327 94.76 wind 5.0 14400 > th dose independent rect. 20 18
329 94.77 temperature 20.0 14400 > th dose independent rect. 14 10
331 94.78 wind 5.0 43200 > th dose independent rect. 19 2
346 94.79 wind 1.0 43200 < th dose dependent rect. 24 4
349 94.80 wind 5.0 14400 > th dose independent rect. 8 4
351 94.80 wind 5.0 14400 < th dose independent rect. 7 5
357 94.80 wind 5.0 14400 < th dose independent rect. 20 18
359 94.81 temperature 25.0 4320 > th dose independent rect. 5 3
365 94.82 temperature 25.0 4320 < th dose independent rect. 5 3
376 94.84 temperature 20.0 14400 < th dose independent rect. 13 11
387 94.85 temperature 20.0 14400 < th dose independent rect. 15 9
397 94.86 temperature 25.0 4320 < th dose independent rect. 4 5
411 94.88 wind 5.0 14400 > th dose independent sin 5 NA
427 94.91 temperature 25.0 4320 > th dose independent rect. 6 1
428 94.91 temperature 25.0 4320 < th dose independent rect. 6 1
429 94.91 wind 5.0 4320 < th dose independent rect. 19 4
434 94.91 wind 3.0 4320 > th dose dependent rect. 19 4
443 94.92 wind 5.0 14400 > th dose dependent rect. 8 2
444 94.93 temperature 20.0 14400 > th dose independent sin 17 NA
446 94.93 wind 5.0 4320 > th dose independent rect. 19 4
464 94.95 wind 5.0 14400 < th dose independent sin 5 NA
493 94.97 temperature 20.0 14400 < th dose independent sin 17 NA
534 95.02 wind 5.0 14400 > th dose dependent rect. 20 18
559 95.05 wind 5.0 14400 > th dose independent rect. 24 14
570 95.07 humidity 90.0 10 > th dose independent rect. 6 4
597 95.09 wind 5.0 14400 < th dose independent rect. 24 14
626 95.11 wind 3.0 4320 > th dose dependent rect. 17 8
650 95.14 wind 1.0 43200 < th dose dependent rect. 1 2
652 95.14 wind 3.0 4320 > th dose dependent rect. 17 11
680 95.17 wind 3.0 43200 > th dose dependent rect. 19 3
684 95.18 wind 5.0 4320 < th dose independent rect. 17 9
697 95.18 wind 3.0 43200 > th dose dependent rect. 20 1
698 95.18 temperature 25.0 4320 > th dose dependent rect. 21 1
710 95.20 radiation 10.0 43200 > th dose independent rect. 10 1
723 95.20 wind 3.0 4320 > th dose dependent rect. 21 1
724 95.20 wind 5.0 14400 > th dose dependent rect. 6 5
732 95.21 wind 5.0 4320 > th dose independent rect. 17 9
747 95.22 wind 5.0 4320 < th dose independent rect. 17 11
763 95.24 temperature 20.0 14400 < th dose independent rect. 24 1
765 95.24 radiation 10.0 43200 > th dose independent rect. 8 3
773 95.24 wind 5.0 4320 > th dose independent rect. 17 11
788 95.25 radiation 1.0 1440 > th dose independent rect. 5 3
789 95.25 radiation 1.0 1440 < th dose independent rect. 5 3
831 95.26 radiation 1.0 1440 < th dose dependent rect. 18 6
834 95.27 radiation 1.0 1440 < th dose independent rect. 21 11
841 95.27 wind 9.0 43200 < th dose independent rect. 20 19
856 95.28 wind 1.0 30 < th dose independent rect. 23 4
862 95.28 radiation 1.0 1440 < th dose independent rect. 2 6
863 95.28 radiation 1.0 1440 < th dose independent rect. 18 6
868 95.28 radiation 1.0 1440 < th dose independent rect. 24 8
887 95.28 temperature 25.0 4320 > th dose dependent rect. 21 12
902 95.29 wind 5.0 14400 > th dose dependent sin 5 NA
908 95.30 radiation 1.0 1440 > th dose independent rect. 18 1
936 95.30 radiation 1.0 1440 < th dose dependent rect. 18 1
947 95.32 radiation 1.0 1440 < th dose independent rect. 18 2
987 95.33 temperature 30.0 4320 > th dose independent rect. 14 2
991 95.33 wind 1.0 30 < th dose independent rect. 21 6