Os03g0349600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0349600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.46 | 0.299 | 12.7 | 0.795 | 1.03 | -0.872 | 0.178 | 1.58 | 0.489 | 4.75 | 20.1 | 1361 | -- | -- |
| 41.06 | 0.298 | 12.7 | 0.859 | 1.07 | -1.13 | 0.0383 | -- | 0.519 | 4.85 | 19.41 | 2096 | -- | -- |
| 40.53 | 0.297 | 12.7 | 0.802 | 1.03 | -0.902 | -- | 1.52 | 0.492 | 4.71 | 19.95 | 1386 | -- | -- |
| 40.82 | 0.298 | 12.7 | 0.826 | 1.05 | -1.32 | -- | -- | 0.492 | 4.8 | 19.26 | 2035 | -- | -- |
| 95.82 | 0.456 | 12.7 | 0.801 | -- | -1.08 | -- | 1.14 | 0.502 | -- | 20.77 | 1158 | -- | -- |
| 52.46 | 0.34 | 12.7 | 1.16 | 1.06 | -- | -0.0344 | -- | 0.617 | 4.71 | -- | -- | -- | -- |
| 52.46 | 0.339 | 12.7 | 1.16 | 1.06 | -- | -- | -- | 0.617 | 4.71 | -- | -- | -- | -- |
| 96.06 | 0.456 | 12.7 | 0.766 | -- | -1.34 | -- | -- | 0.492 | -- | 19.09 | 2577 | -- | -- |
| 50.24 | 0.33 | 12.8 | -- | 1.04 | -1.62 | -- | -- | 0.318 | 4.77 | 19.92 | 8107 | -- | -- |
| 111.83 | 0.494 | 12.7 | 1.2 | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
| 87.82 | 0.438 | 12.7 | -- | 1.08 | -- | -- | -- | 0.488 | 4.68 | -- | -- | -- | -- |
| 107.76 | 0.483 | 12.8 | -- | -- | -1.38 | -- | -- | 0.318 | -- | 17.99 | 31389 | -- | -- |
| 149.71 | 0.571 | 12.7 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.25 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 17 |
| 10 | 39.60 | temperature | 20 | 720 | < th | dose dependent | sin | 15 | NA |
| 11 | 39.60 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 15 | 39.68 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 43 | 39.90 | temperature | 15 | 1440 | > th | dose independent | sin | 1 | NA |
| 52 | 39.94 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 20 |
| 63 | 39.99 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 18 |
| 89 | 40.11 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 93 | 40.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 106 | 40.18 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 134 | 40.24 | temperature | 15 | 4320 | < th | dose dependent | sin | 3 | NA |
| 157 | 40.30 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 240 | 40.48 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 241 | 40.48 | temperature | 15 | 4320 | < th | dose dependent | rect. | 24 | 7 |
| 281 | 40.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 283 | 40.57 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 16 |
| 284 | 40.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 299 | 40.59 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 328 | 40.64 | temperature | 20 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 340 | 40.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 343 | 40.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 356 | 40.71 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 10 |
| 359 | 40.72 | temperature | 20 | 720 | > th | dose independent | sin | 20 | NA |
| 361 | 40.73 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 363 | 40.73 | humidity | 90 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 426 | 40.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 428 | 40.89 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 21 |
| 436 | 40.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 496 | 41.02 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 21 |
| 506 | 41.03 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 548 | 41.09 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 590 | 41.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 597 | 41.16 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 628 | 41.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 777 | 41.44 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 790 | 41.46 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 791 | 41.46 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 827 | 41.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 845 | 41.54 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 868 | 41.57 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 869 | 41.57 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 885 | 41.59 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 954 | 41.66 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 970 | 41.68 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 971 | 41.68 | temperature | 15 | 1440 | < th | dose independent | rect. | 3 | 11 |