Os03g0349200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin-dependent protein kinase-like protein.
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Os03g0349200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclin-dependent protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.11 | 0.508 | 9 | 1.25 | 3.03 | 1.36 | -1.58 | -0.291 | 0.431 | 18.3 | 0.869 | 38 | 1.95 | -- |
| 117.39 | 0.505 | 9 | 1.25 | 3.02 | 1.35 | -1.48 | -- | 0.427 | 18.3 | 0.8685 | 38 | 2.01 | -- |
| 122.69 | 0.516 | 9 | 1.27 | 3.02 | 1.36 | -- | 0.0498 | 0.425 | 18.3 | 0.96 | 38 | 2.05 | -- |
| 122.7 | 0.516 | 9 | 1.27 | 3.02 | 1.37 | -- | -- | 0.428 | 18.3 | 0.95 | 38 | 2.06 | -- |
| 257.16 | 0.747 | 9.01 | 1.05 | -- | 1.95 | -- | -0.917 | 0.494 | -- | 19.74 | 4 | 10.2 | -- |
| 148.63 | 0.572 | 9.02 | 1.22 | 2.77 | -- | -1.34 | -- | 0.377 | 19.9 | -- | -- | -- | -- |
| 153.86 | 0.581 | 9.02 | 1.25 | 2.77 | -- | -- | -- | 0.375 | 19.9 | -- | -- | -- | -- |
| 153.86 | 0.578 | 8.95 | 1.25 | -- | 2.77 | -- | -- | 0.375 | -- | 73.33 | 2 | 10.1 | -- |
| 164.64 | 0.598 | 9.03 | -- | 3.08 | 1.44 | -- | -- | 0.317 | 18.2 | 1.789 | 41 | 2.31 | -- |
| 570.14 | 1.12 | 8.95 | 1.22 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 195.04 | 0.653 | 9.05 | -- | 2.76 | -- | -- | -- | 0.236 | 19.9 | -- | -- | -- | -- |
| 195.04 | 0.65 | 8.98 | -- | -- | 2.76 | -- | -- | 0.236 | -- | 96.62 | 2 | 10.1 | -- |
| 609.41 | 1.15 | 8.99 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 2 | 108.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 7 | 109.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 9 | 109.94 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 10 | 111.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 11 | 111.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 25 | 112.51 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 47 | 114.61 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 53 | 114.89 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 55 | 114.94 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 16 |
| 57 | 115.13 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 72 | 115.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 17 |
| 75 | 115.32 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 15 |
| 78 | 115.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 83 | 115.49 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 93 | 115.72 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 7 |
| 95 | 115.77 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 96 | 115.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 99 | 115.83 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 103 | 115.94 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 9 | 8 |
| 108 | 116.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 110 | 116.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 121 | 116.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 123 | 116.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 124 | 116.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 125 | 116.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 128 | 116.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 129 | 116.33 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 134 | 116.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 135 | 116.33 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 149 | 116.36 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 157 | 116.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 158 | 116.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 161 | 116.46 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 177 | 116.55 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 185 | 116.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 187 | 116.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 247 | 117.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 262 | 117.16 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 310 | 117.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 327 | 117.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 8 |
| 329 | 117.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 330 | 117.96 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 334 | 118.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 16 |
| 336 | 118.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 345 | 118.20 | radiation | 1.0 | 30 | < th | dose independent | sin | 8 | NA |
| 358 | 118.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 365 | 118.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 368 | 118.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 383 | 118.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 395 | 118.50 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 423 | 118.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 432 | 118.66 | radiation | 1.0 | 30 | > th | dose independent | sin | 8 | NA |
| 435 | 118.68 | radiation | 1.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 469 | 118.96 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 497 | 119.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 523 | 119.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 537 | 119.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 545 | 119.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 558 | 119.70 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 559 | 119.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 6 |
| 561 | 119.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 564 | 119.72 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 680 | 120.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 18 |
| 681 | 120.36 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 716 | 120.53 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 751 | 120.71 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 766 | 120.78 | humidity | 80.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 773 | 120.84 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 790 | 120.85 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 816 | 121.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 818 | 121.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 18 |
| 821 | 121.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 829 | 121.08 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 834 | 121.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 858 | 121.21 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 870 | 121.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 872 | 121.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 873 | 121.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 874 | 121.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 877 | 121.28 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 902 | 121.44 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 907 | 121.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 915 | 121.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 975 | 121.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 8 |