Os03g0349000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleoporin interacting component family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0349000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nucleoporin interacting component family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.94 | 0.286 | 9.31 | 1.47 | 0.66 | -0.694 | 0.134 | 2.03 | 0.135 | 16.8 | 25.77 | 1181 | -- | -- |
| 38.71 | 0.29 | 9.38 | 1.03 | 0.666 | -0.52 | 0.225 | -- | 0.0966 | 16.8 | 21.44 | 1120 | -- | -- |
| 36.98 | 0.283 | 9.31 | 1.46 | 0.664 | -0.693 | -- | 1.95 | 0.137 | 16.8 | 25.67 | 1172 | -- | -- |
| 38.17 | 0.288 | 9.36 | 0.996 | 0.659 | -0.509 | -- | -- | 0.0711 | 16.8 | 23.83 | 1158 | -- | -- |
| 58.25 | 0.355 | 9.3 | 1.5 | -- | -0.807 | -- | 1.81 | 0.195 | -- | 24 | 1214 | -- | -- |
| 46.53 | 0.32 | 9.38 | 0.843 | 0.708 | -- | 0.142 | -- | -0.0101 | 16.3 | -- | -- | -- | -- |
| 46.58 | 0.32 | 9.38 | 0.845 | 0.708 | -- | -- | -- | -0.0093 | 16.3 | -- | -- | -- | -- |
| 59.77 | 0.36 | 9.35 | 1.02 | -- | -0.626 | -- | -- | 0.0712 | -- | 24 | 1212 | -- | -- |
| 61.44 | 0.365 | 9.41 | -- | 0.656 | -0.228 | -- | -- | -0.145 | 16.3 | 32.63 | 1116 | -- | -- |
| 73.63 | 0.401 | 9.37 | 0.816 | -- | -- | -- | -- | -0.0281 | -- | -- | -- | -- | -- |
| 65.39 | 0.378 | 9.4 | -- | 0.692 | -- | -- | -- | -0.103 | 16.3 | -- | -- | -- | -- |
| 81.22 | 0.421 | 9.4 | -- | -- | 0.633 | -- | -- | -0.159 | -- | 24.82 | 1205 | -- | -- |
| 91.21 | 0.446 | 9.39 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 8 | 36.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 92 | 36.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 130 | 36.88 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 163 | 36.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 205 | 37.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 225 | 37.15 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 228 | 37.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 229 | 37.15 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 340 | 37.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 349 | 37.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 443 | 37.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 475 | 37.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 481 | 37.54 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 496 | 37.56 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 512 | 37.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 525 | 37.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 534 | 37.61 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 557 | 37.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 581 | 37.66 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 591 | 37.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 631 | 37.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 667 | 37.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 671 | 37.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 696 | 37.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 774 | 37.84 | wind | 5 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 795 | 37.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 877 | 37.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 885 | 37.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 903 | 37.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |