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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0347900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0819) R2 : 0.725
β1 : -9.01 (0.597) R2dD : 1.05 R2D : -0.0942
β2 : 0.75 (0.159) R2dC : 0.0119 R2C : 0.0108
β3 : 2.58 (0.284) R2dE : 0.141 R2E : -0.234
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -25 (2.17) R2dD*E : 0.629 R2D*E : -0.785
γ1 : 2.49 (0.159) R2dN8 : 0.282 R2N8 : 0.418
σ : 1.16
deviance : 624.28
__
_____
C
peak time of C : 3.08
E
wheather : temperature
threshold : 25.32
memory length : 5124
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 1.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
628.26 1.18 4.94 -8.98 0.753 2.59 -2.62 -25.1 2.41 3.3 25.18 4795 18.1 1.18
817.13 1.33 4.32 -2.5 0.839 -0.658 -3.18 -- 3.69 2.93 -45.18 47520 14.6 7.48
624.28 1.16 4.95 -9.01 0.75 2.58 -- -25 2.49 3.08 25.32 5124 18.2 1.4
844.42 1.35 4.26 -1.76 0.785 -1.18 -- -- 3.92 2.85 -92.19 47520 7.96 5.7
642.35 1.18 4.97 -9.96 -- 2.87 -- -26.8 2.4 -- 25.3 5149 18.6 0.433
821.72 1.34 4.39 -3.09 0.822 -- -3.12 -- 3.39 2.86 -- -- -- --
854.91 1.37 4.38 -3.02 0.808 -- -- -- 3.41 2.66 -- -- -- --
881.09 1.38 4.26 -1.84 -- -1.12 -- -- 3.91 -- -69.31 47520 9.09 0.00198
866.43 1.37 4.14 -- 0.844 -2.42 -- -- 4.5 2.56 -100.3 47520 8.85 4.18
893.04 1.4 4.37 -2.99 -- -- -- -- 3.43 -- -- -- -- --
1095.55 1.55 4.3 -- 0.749 -- -- -- 3.75 2.61 -- -- -- --
902.5 1.4 4.13 -- -- -2.39 -- -- 4.53 -- -57.45 47520 9.28 0.0252
1128.43 1.57 4.3 -- -- -- -- -- 3.76 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 625.36 wind 1.0 14400 < th dose dependent rect. 1 1
2 639.71 precipitation 0.1 43200 > th dose independent rect. 8 8
3 640.06 precipitation 0.1 43200 < th dose independent rect. 8 8
4 640.06 precipitation 0.1 43200 < th dose dependent rect. 8 8
14 647.97 temperature 25.0 4320 > th dose dependent rect. 18 1
15 648.32 radiation 10.0 43200 < th dose independent rect. 15 1
20 652.66 radiation 10.0 1440 < th dose independent rect. 15 1
28 656.29 wind 1.0 14400 < th dose dependent rect. 24 4
30 656.97 humidity 70.0 43200 < th dose independent rect. 18 14
34 658.19 radiation 10.0 1440 > th dose independent rect. 15 21
37 658.71 radiation 10.0 43200 < th dose dependent rect. 15 2
39 660.40 humidity 70.0 43200 < th dose independent rect. 17 17
40 660.80 atmosphere 995.0 43200 < th dose dependent rect. 18 7
43 661.34 atmosphere 995.0 43200 < th dose independent rect. 21 4
47 661.45 atmosphere 995.0 43200 < th dose dependent rect. 21 4
54 661.80 humidity 70.0 43200 > th dose independent rect. 18 15
56 662.09 atmosphere 995.0 43200 > th dose independent rect. 21 1
57 662.13 atmosphere 995.0 43200 > th dose independent rect. 21 4
62 662.27 atmosphere 995.0 43200 > th dose independent rect. 23 1
67 662.41 humidity 60.0 43200 < th dose independent rect. 12 21
73 662.44 humidity 70.0 43200 < th dose independent rect. 17 2
80 662.68 atmosphere 995.0 43200 < th dose independent rect. 21 1
92 662.68 atmosphere 995.0 43200 < th dose dependent rect. 21 1
105 662.74 humidity 60.0 43200 < th dose independent rect. 12 17
122 663.21 humidity 60.0 43200 > th dose independent sin 14 NA
125 663.26 humidity 60.0 43200 > th dose independent rect. 19 22
132 663.37 humidity 60.0 43200 > th dose independent rect. 12 22
156 663.80 precipitation 0.1 43200 < th dose independent rect. 14 2
158 663.80 precipitation 0.1 43200 < th dose dependent rect. 14 2
160 663.86 atmosphere 995.0 43200 > th dose independent rect. 21 11
172 664.00 atmosphere 995.0 43200 < th dose independent rect. 21 11
179 664.09 precipitation 0.1 43200 > th dose independent rect. 14 2
181 664.09 precipitation 0.1 43200 > th dose dependent rect. 14 2
197 664.25 atmosphere 995.0 43200 < th dose dependent rect. 17 15
204 664.32 humidity 60.0 43200 > th dose independent rect. 11 18
209 664.40 humidity 60.0 43200 > th dose independent rect. 13 15
210 664.44 humidity 70.0 43200 > th dose independent rect. 17 2
219 664.57 humidity 60.0 43200 < th dose independent rect. 12 11
233 664.71 humidity 60.0 43200 < th dose independent rect. 12 5
245 664.92 humidity 60.0 43200 < th dose independent sin 14 NA
293 665.64 atmosphere 995.0 43200 < th dose dependent rect. 21 11
331 665.97 atmosphere 995.0 43200 < th dose dependent sin 13 NA
338 666.08 humidity 70.0 43200 < th dose dependent sin 11 NA
350 666.37 humidity 60.0 43200 > th dose independent no NA NA
353 666.39 humidity 60.0 43200 > th dose independent rect. 6 23
366 666.52 humidity 60.0 43200 > th dose independent rect. 24 23
368 666.55 humidity 60.0 43200 > th dose independent rect. 11 6
369 666.55 radiation 10.0 43200 < th dose dependent rect. 7 16
371 666.56 radiation 10.0 43200 < th dose dependent rect. 7 14
385 666.61 humidity 60.0 43200 > th dose independent rect. 3 23
395 666.72 temperature 25.0 4320 > th dose dependent rect. 18 15
456 667.44 humidity 70.0 43200 < th dose independent sin 10 NA
479 667.70 humidity 60.0 43200 < th dose independent rect. 20 21
511 668.14 atmosphere 995.0 43200 > th dose independent rect. 5 1
521 668.22 radiation 10.0 43200 < th dose dependent sin 21 NA
546 668.51 radiation 20.0 43200 < th dose dependent rect. 13 5
600 668.93 radiation 20.0 43200 < th dose dependent rect. 13 10
601 668.94 radiation 20.0 43200 < th dose dependent rect. 13 8
625 669.09 radiation 10.0 43200 < th dose dependent rect. 15 22
673 669.44 humidity 70.0 43200 < th dose independent rect. 18 7
680 669.53 temperature 25.0 4320 > th dose dependent rect. 18 12
685 669.58 atmosphere 995.0 43200 > th dose independent rect. 1 1
692 669.66 atmosphere 995.0 43200 < th dose independent rect. 1 1
720 669.66 atmosphere 995.0 43200 < th dose dependent rect. 1 1
755 669.70 humidity 70.0 43200 < th dose dependent rect. 17 15
780 669.93 precipitation 0.1 43200 > th dose dependent rect. 8 7
794 670.08 radiation 10.0 43200 > th dose independent rect. 15 16
800 670.16 radiation 10.0 1440 < th dose independent rect. 11 1
813 670.27 radiation 20.0 43200 < th dose dependent sin 17 NA
816 670.29 humidity 70.0 43200 < th dose dependent rect. 17 11
820 670.38 humidity 70.0 43200 < th dose dependent rect. 15 19
831 670.50 atmosphere 995.0 43200 < th dose independent sin 10 NA
834 670.54 humidity 70.0 43200 < th dose dependent rect. 16 17
845 670.71 atmosphere 995.0 43200 > th dose independent sin 10 NA
928 671.51 radiation 10.0 43200 > th dose independent sin 13 NA
931 671.54 wind 3.0 14400 < th dose dependent rect. 8 1
945 671.68 humidity 60.0 43200 < th dose independent no NA NA
951 671.70 humidity 60.0 43200 < th dose independent rect. 24 23
964 671.80 humidity 60.0 43200 < th dose independent rect. 6 23