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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0347700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NPH3 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0192) R2 : 0.000205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0124 (0.0405) R2dN8 : 0.000265 R2N8 : 0.000205
σ : 0.362
deviance : 60.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.73 0.357 3.02 -0.0636 0.0337 2.58 -0.307 -6.13 0.00337 23.3 49.64 100 -- --
58.82 0.357 3 0.0137 0.0499 0.37 -0.301 -- -0.00824 21.2 52.73 124 -- --
58.08 0.355 3.01 -0.0529 0.0327 2.63 -- -6.06 0.00711 22.2 49.39 100 -- --
58.99 0.358 3 0.0198 0.055 0.38 -- -- 0.00352 21.4 53.53 92 -- --
57.88 0.354 3.03 -0.092 -- 4.76 -- -11.4 0.0056 -- 49 100 -- --
59.61 0.362 3 0.0332 0.0352 -- -0.318 -- -0.00871 23.3 -- -- -- --
59.89 0.362 3 0.048 0.067 -- -- -- -0.00617 19.6 -- -- -- --
59.16 0.358 2.99 0.0199 -- 0.389 -- -- 0.00245 -- 53.42 92 -- --
59 0.358 3 -- 0.0531 0.391 -- -- 0.000623 21.7 53.53 88 -- --
60.13 0.362 3 0.0471 -- -- -- -- -0.00717 -- -- -- -- --
59.95 0.362 3 -- 0.0666 -- -- -- -0.0115 19.7 -- -- -- --
59.16 0.358 2.99 -- -- 0.414 -- -- 0.000384 -- 53.09 100 -- --
60.19 0.362 3 -- -- -- -- -- -0.0124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.64 wind 1.0 10 < th dose independent rect. 22 1
3 50.64 wind 1.0 10 < th dose dependent rect. 22 1
22 53.73 temperature 20.0 90 > th dose dependent rect. 20 3
25 53.90 temperature 25.0 270 > th dose independent rect. 19 2
40 54.48 wind 5.0 10 < th dose dependent rect. 20 3
55 54.96 humidity 80.0 30 > th dose independent rect. 20 3
78 55.47 humidity 80.0 10 > th dose independent rect. 22 1
81 55.49 temperature 20.0 10 > th dose independent rect. 20 3
89 55.59 humidity 80.0 30 > th dose dependent rect. 22 1
90 55.59 atmosphere 1015.0 30 < th dose dependent rect. 22 1
94 55.62 humidity 50.0 90 > th dose independent rect. 23 21
101 55.65 temperature 20.0 10 > th dose independent rect. 22 1
109 55.67 temperature 10.0 30 > th dose independent rect. 22 1
111 55.67 temperature 30.0 30 < th dose independent rect. 22 1
112 55.67 humidity 50.0 30 > th dose independent rect. 22 1
115 55.67 atmosphere 995.0 30 > th dose independent rect. 22 1
116 55.67 atmosphere 1010.0 30 < th dose independent rect. 22 1
118 55.67 radiation 1.0 30 < th dose independent rect. 22 1
123 55.67 precipitation 0.1 30 < th dose independent rect. 22 1
124 55.67 temperature 10.0 30 > th dose independent rect. 23 23
126 55.67 radiation 1.0 30 < th dose dependent rect. 22 1
131 55.67 precipitation 0.1 30 < th dose dependent rect. 22 1
145 55.73 atmosphere 995.0 30 > th dose dependent rect. 22 1
178 55.84 wind 9.0 1440 < th dose independent rect. 23 1
179 55.84 temperature 10.0 1440 > th dose independent rect. 23 1
182 55.84 temperature 30.0 1440 < th dose independent rect. 23 1
186 55.84 humidity 50.0 1440 > th dose independent rect. 23 1
197 55.84 atmosphere 995.0 1440 > th dose independent rect. 23 1
198 55.84 radiation 1.0 1440 < th dose independent rect. 23 1
218 55.84 temperature 10.0 1440 > th dose independent rect. 24 23
221 55.84 temperature 30.0 30 < th dose dependent rect. 22 1
222 55.84 radiation 1.0 1440 < th dose dependent rect. 23 1
241 55.92 humidity 90.0 30 < th dose independent rect. 22 1
244 55.93 humidity 60.0 30 < th dose dependent rect. 17 1
247 55.95 wind 1.0 30 > th dose independent rect. 22 1
272 56.15 humidity 90.0 30 < th dose dependent rect. 22 1
273 56.16 wind 1.0 30 > th dose dependent rect. 22 1
275 56.18 humidity 70.0 30 > th dose dependent rect. 20 3
303 56.34 humidity 50.0 90 > th dose independent rect. 21 23
325 56.37 atmosphere 995.0 30 > th dose dependent rect. 20 3
336 56.43 wind 9.0 30 < th dose independent rect. 23 21
338 56.43 radiation 10.0 14400 < th dose dependent rect. 21 3
339 56.44 atmosphere 1000.0 30 > th dose independent rect. 20 3
353 56.46 temperature 10.0 1440 > th dose independent rect. 21 3
356 56.46 temperature 30.0 1440 < th dose independent rect. 21 3
360 56.46 humidity 50.0 1440 > th dose independent rect. 21 3
366 56.46 atmosphere 995.0 1440 > th dose independent rect. 21 3
367 56.46 radiation 1.0 1440 < th dose independent rect. 21 3
387 56.46 temperature 10.0 1440 > th dose independent rect. 24 21
401 56.48 wind 9.0 30 < th dose independent rect. 23 23
403 56.49 temperature 25.0 270 > th dose independent rect. 17 13
404 56.49 atmosphere 995.0 30 > th dose independent rect. 23 21
407 56.50 humidity 60.0 30 < th dose independent rect. 17 1
410 56.51 temperature 10.0 30 > th dose independent rect. 20 3
412 56.51 temperature 30.0 30 < th dose independent rect. 20 3
413 56.51 humidity 50.0 30 > th dose independent rect. 20 3
417 56.51 atmosphere 1010.0 30 < th dose independent rect. 20 3
419 56.51 radiation 1.0 30 < th dose independent rect. 20 3
424 56.51 precipitation 0.1 30 < th dose independent rect. 20 3
425 56.51 temperature 10.0 30 > th dose independent rect. 23 21
429 56.51 radiation 1.0 30 < th dose dependent rect. 20 3
434 56.51 precipitation 0.1 30 < th dose dependent rect. 20 3
446 56.52 precipitation 0.1 30 < th dose independent rect. 23 21
449 56.52 precipitation 0.1 30 < th dose dependent rect. 23 21
460 56.54 radiation 1.0 30 > th dose dependent rect. 17 1
462 56.55 precipitation 0.1 1440 < th dose independent rect. 21 3
464 56.55 precipitation 0.1 1440 < th dose dependent rect. 21 3
474 56.59 temperature 30.0 30 > th dose dependent rect. 17 1
477 56.61 wind 1.0 30 > th dose independent rect. 20 3
507 56.63 radiation 10.0 30 < th dose dependent rect. 23 21
536 56.68 temperature 20.0 30 > th dose dependent rect. 20 7
547 56.72 temperature 30.0 30 < th dose independent rect. 23 21
549 56.72 wind 5.0 30 < th dose dependent rect. 17 6
582 56.81 atmosphere 1010.0 30 < th dose independent rect. 23 21
656 56.97 temperature 25.0 270 > th dose dependent rect. 18 12
672 57.00 atmosphere 1015.0 30 < th dose dependent rect. 20 3
673 57.00 temperature 25.0 90 > th dose dependent rect. 20 10
681 57.03 precipitation 0.1 30 < th dose independent rect. 23 23
690 57.03 precipitation 0.1 30 < th dose dependent rect. 23 23
700 57.05 atmosphere 995.0 10 > th dose independent rect. 23 23
746 57.16 humidity 60.0 30 > th dose independent rect. 12 8
797 57.24 temperature 25.0 90 > th dose independent rect. 20 10
832 57.28 atmosphere 1005.0 90 > th dose independent rect. 20 1
841 57.29 radiation 30.0 90 < th dose dependent rect. 23 10
882 57.35 humidity 90.0 90 < th dose independent rect. 20 3
886 57.35 temperature 10.0 30 > th dose dependent rect. 23 21
902 57.37 temperature 25.0 270 < th dose independent rect. 16 12
904 57.37 radiation 1.0 30 < th dose independent rect. 23 21
945 57.41 temperature 30.0 30 > th dose independent rect. 17 1
966 57.42 radiation 30.0 10 < th dose dependent rect. 23 12
967 57.43 temperature 25.0 270 > th dose independent sin 13 NA
987 57.45 temperature 25.0 270 < th dose independent sin 14 NA
988 57.45 radiation 1.0 270 > th dose independent rect. 18 1