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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0347500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Senescence-associated protein (SAG29).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0174) R2 : 0.383
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.47 (0.329) R2dE : 0.373 R2E : 0.373
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0861 (0.0367) R2dN8 : 0.00965 R2N8 : 0.0101
σ : 0.328
deviance : 49.34
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.75
memory length : 112
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.97
open length of G : 0.00479

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.57 0.325 3.19 -0.0238 0.0641 2.43 -0.349 -20.8 -0.0818 3.02 5 11 10 1
49.39 0.327 3.21 0.0146 0.0354 4.98 -0.444 -- -0.0833 0.537 5.721 30 9.97 0.0108
48.96 0.326 3.18 -0.0159 0.066 2.41 -- -20.7 -0.0797 3.96 4.96 25 10 1.58
48.98 0.328 3.19 0.066 0.0664 5.48 -- -- -0.0803 4.02 5.75 112 9.97 0.00479
49.2 0.327 3.18 -0.0137 -- 2.41 -- -20.7 -0.078 -- 4.964 25 10 1.58
78.47 0.415 3.19 0.0163 0.0795 -- -0.364 -- -0.103 4.9 -- -- -- --
78.77 0.416 3.19 0.0179 0.0828 -- -- -- -0.101 6.12 -- -- -- --
49.22 0.328 3.19 0.0687 -- 5.48 -- -- -0.0785 -- 5.75 112 9.97 0.00479
49.09 0.328 3.19 -- 0.0677 5.47 -- -- -0.0876 4.02 5.738 112 9.98 0.00699
79.12 0.416 3.19 0.0202 -- -- -- -- -0.0992 -- -- -- -- --
78.78 0.415 3.19 -- 0.0831 -- -- -- -0.103 6.11 -- -- -- --
49.34 0.328 3.19 -- -- 5.47 -- -- -0.0861 -- 5.75 112 9.97 0.00479
79.13 0.415 3.19 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.57 wind 5.0 10 > th dose independent rect. 10 1
5 48.57 wind 5.0 10 > th dose dependent rect. 10 1
26 48.87 humidity 90.0 90 > th dose independent rect. 8 2
29 49.59 humidity 90.0 90 > th dose dependent rect. 8 2
40 52.20 wind 9.0 90 > th dose dependent rect. 21 13
334 70.35 temperature 25.0 30 > th dose independent rect. 9 1
443 72.64 wind 5.0 720 < th dose independent rect. 24 9
444 72.64 wind 7.0 720 > th dose independent rect. 22 12
475 72.88 wind 7.0 1440 > th dose dependent rect. 13 4
484 72.94 wind 7.0 1440 > th dose independent rect. 13 4
504 73.05 radiation 10.0 270 < th dose dependent rect. 7 1
512 73.09 atmosphere 1005.0 10 < th dose independent rect. 8 2
514 73.09 wind 7.0 1440 < th dose independent rect. 13 4
520 73.12 humidity 90.0 270 > th dose independent rect. 6 3
545 73.19 precipitation 0.1 270 > th dose independent rect. 5 3
548 73.19 precipitation 0.1 270 > th dose dependent rect. 5 3
563 73.25 radiation 10.0 270 < th dose dependent rect. 6 3
583 73.31 wind 9.0 1440 > th dose dependent rect. 9 2
593 73.32 radiation 1.0 270 < th dose independent rect. 6 1
598 73.33 wind 5.0 720 < th dose independent rect. 23 6
634 73.48 radiation 10.0 90 < th dose independent rect. 8 1
686 73.64 wind 7.0 10 > th dose independent sin 5 NA
689 73.64 wind 9.0 1440 < th dose independent rect. 1 9
815 73.93 wind 9.0 1440 < th dose independent rect. 4 7
817 73.93 wind 7.0 1440 > th dose independent rect. 24 17
838 73.96 wind 7.0 1440 > th dose independent rect. 12 17
847 73.97 wind 7.0 1440 > th dose independent rect. 2 15
849 73.97 wind 7.0 1440 < th dose independent rect. 24 17
897 74.01 wind 7.0 1440 < th dose independent rect. 4 13
899 74.01 wind 7.0 1440 < th dose independent rect. 2 15
964 74.06 wind 7.0 1440 > th dose independent rect. 12 11
996 74.09 wind 7.0 1440 < th dose independent rect. 7 10