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Os03g0347200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Initiation factor eIF-4 gamma, middle domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0143) R2 : 0.765
β1 : 1.14 (0.0523) R2dD : 0.255 R2D : 0.203
β2 : 1.19 (0.0368) R2dC : 0.538 R2C : 0.506
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.0305) R2dN8 : 0.0368 R2N8 : -0.0115
σ : 0.269
deviance : 32.92
__
_____
C
peak time of C : 16.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.09 0.253 11.1 1.21 1.16 0.55 -0.102 -0.72 0.267 16.5 80 1363 -- --
29.55 0.253 11.1 1.16 1.15 0.523 -0.147 -- 0.256 16.5 80 1357 -- --
29.09 0.251 11.1 1.22 1.14 0.538 -- -0.738 0.267 16.6 80.16 1314 -- --
29.6 0.253 11.1 1.15 1.15 0.51 -- -- 0.253 16.6 80.02 1353 -- --
81.63 0.423 11.1 1.08 -- -0.482 -- 0.0109 0.194 -- 80.5 1257 -- --
32.9 0.269 11.1 1.14 1.19 -- -0.0722 -- 0.223 16.5 -- -- -- --
32.92 0.269 11.1 1.14 1.19 -- -- -- 0.223 16.5 -- -- -- --
81.07 0.421 11.1 1.05 -- -0.494 -- -- 0.21 -- 79 1259 -- --
62.19 0.367 11.1 -- 1.14 0.574 -- -- 0.239 16.6 84.07 2809 -- --
108.17 0.486 11.1 1.1 -- -- -- -- 0.192 -- -- -- -- --
67.39 0.384 11.1 -- 1.17 -- -- -- 0.0955 16.5 -- -- -- --
110.34 0.491 11.1 -- -- -0.516 -- -- 0.0939 -- 79 1259 -- --
139.96 0.552 11.1 -- -- -- -- -- 0.0698 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.34 wind 5.0 270 < th dose independent rect. 3 2
2 25.45 precipitation 0.1 270 < th dose independent rect. 3 2
3 25.45 precipitation 0.1 270 < th dose dependent rect. 3 2
4 25.59 wind 9.0 270 < th dose independent rect. 5 22
5 25.64 wind 5.0 90 < th dose independent rect. 3 5
7 25.74 precipitation 0.1 90 < th dose independent rect. 3 5
8 25.74 precipitation 0.1 90 < th dose dependent rect. 3 5
9 25.76 wind 9.0 90 < th dose independent rect. 8 19
10 25.85 radiation 1.0 270 < th dose dependent rect. 3 2
12 25.87 temperature 10.0 270 > th dose independent rect. 3 2
14 25.87 temperature 30.0 270 < th dose independent rect. 3 2
15 25.87 humidity 50.0 270 > th dose independent rect. 3 2
18 25.87 atmosphere 995.0 270 > th dose independent rect. 3 2
19 25.87 atmosphere 1010.0 270 < th dose independent rect. 3 2
21 25.87 radiation 20.0 270 < th dose independent rect. 3 2
24 25.87 temperature 10.0 270 > th dose independent rect. 5 22
25 25.88 radiation 30.0 270 < th dose dependent rect. 3 2
29 25.91 radiation 1.0 270 < th dose independent rect. 3 2
34 25.97 temperature 10.0 90 > th dose independent rect. 3 5
36 25.97 temperature 30.0 90 < th dose independent rect. 3 5
37 25.97 humidity 50.0 90 > th dose independent rect. 3 5
39 25.97 atmosphere 995.0 90 > th dose independent rect. 3 5
40 25.97 atmosphere 1015.0 90 < th dose independent rect. 3 5
41 25.97 temperature 10.0 90 > th dose independent rect. 8 19
43 26.02 radiation 40.0 90 < th dose independent rect. 3 5
44 26.05 atmosphere 995.0 90 > th dose independent rect. 8 19
45 26.08 wind 9.0 270 < th dose dependent rect. 3 2
46 26.12 wind 1.0 270 > th dose independent rect. 3 2
48 26.19 precipitation 0.1 90 < th dose independent rect. 8 19
49 26.19 precipitation 0.1 90 < th dose dependent rect. 8 19
51 26.21 wind 9.0 90 < th dose dependent rect. 3 5
54 26.23 wind 7.0 270 < th dose independent rect. 6 20
56 26.25 wind 5.0 270 < th dose independent rect. 1 6
67 26.42 precipitation 0.1 10 < th dose independent rect. 3 5
68 26.42 precipitation 0.1 10 < th dose dependent rect. 3 5
74 26.50 temperature 10.0 90 > th dose dependent rect. 3 5
77 26.51 precipitation 0.1 270 < th dose independent rect. 1 6
79 26.51 precipitation 0.1 270 < th dose dependent rect. 1 6
92 26.52 temperature 10.0 270 > th dose independent rect. 6 20
95 26.53 atmosphere 1015.0 270 < th dose dependent rect. 3 2
98 26.56 temperature 10.0 270 > th dose dependent rect. 3 2
99 26.56 radiation 40.0 270 < th dose dependent rect. 2 4
106 26.61 wind 9.0 10 < th dose independent rect. 8 20
113 26.64 precipitation 0.1 270 < th dose independent rect. 5 22
114 26.64 precipitation 0.1 270 < th dose dependent rect. 5 22
125 26.69 atmosphere 1000.0 90 > th dose dependent rect. 3 5
129 26.70 wind 9.0 90 < th dose dependent rect. 8 19
132 26.71 humidity 50.0 270 > th dose dependent rect. 3 2
152 26.73 atmosphere 995.0 270 > th dose independent rect. 6 20
176 26.77 temperature 10.0 270 > th dose independent rect. 1 6
178 26.77 temperature 30.0 270 < th dose independent rect. 1 6
179 26.77 humidity 50.0 270 > th dose independent rect. 1 6
181 26.77 atmosphere 995.0 270 > th dose independent rect. 1 6
182 26.77 atmosphere 1015.0 270 < th dose independent rect. 1 6
183 26.77 radiation 30.0 270 < th dose independent rect. 1 6
189 26.77 atmosphere 995.0 270 > th dose independent rect. 5 22
204 26.80 wind 1.0 270 > th dose independent rect. 2 4
215 26.80 radiation 40.0 270 < th dose dependent rect. 1 6
252 26.83 precipitation 0.1 270 < th dose independent rect. 6 20
255 26.83 precipitation 0.1 270 < th dose dependent rect. 6 20
279 26.86 temperature 30.0 270 < th dose dependent rect. 3 2
280 26.86 atmosphere 1005.0 10 > th dose dependent rect. 4 4
281 26.87 wind 1.0 270 > th dose independent rect. 1 6
293 26.90 temperature 10.0 10 > th dose dependent rect. 3 5
299 26.91 atmosphere 1000.0 270 > th dose dependent rect. 3 2
350 27.01 wind 9.0 10 < th dose dependent rect. 4 4
351 27.01 atmosphere 1015.0 90 < th dose dependent rect. 3 5
374 27.04 wind 9.0 270 < th dose dependent rect. 8 2
383 27.06 temperature 15.0 90 > th dose independent rect. 13 19
402 27.08 humidity 50.0 90 > th dose independent rect. 8 19
405 27.08 wind 9.0 270 < th dose dependent rect. 1 6
408 27.10 atmosphere 1005.0 270 > th dose independent rect. 3 2
421 27.12 radiation 1.0 270 < th dose dependent rect. 3 9
424 27.13 atmosphere 1005.0 90 > th dose independent rect. 3 5
425 27.13 temperature 15.0 270 > th dose independent rect. 13 17
427 27.13 wind 9.0 270 < th dose dependent rect. 7 4
435 27.15 wind 9.0 270 < th dose dependent rect. 6 20
450 27.17 precipitation 0.1 270 < th dose independent rect. 2 15
455 27.17 precipitation 0.1 270 < th dose dependent rect. 2 15
463 27.18 atmosphere 995.0 90 > th dose dependent rect. 8 19
466 27.19 wind 7.0 270 < th dose independent rect. 6 7
487 27.21 humidity 90.0 720 > th dose dependent rect. 22 3
514 27.23 wind 9.0 1440 < th dose independent rect. 4 5
515 27.23 temperature 10.0 1440 > th dose independent rect. 4 5
518 27.23 humidity 50.0 1440 > th dose independent rect. 4 5
520 27.23 atmosphere 995.0 1440 > th dose independent rect. 4 5
521 27.23 atmosphere 1015.0 1440 < th dose independent rect. 4 5
523 27.23 temperature 10.0 1440 > th dose independent rect. 9 19
538 27.24 temperature 15.0 270 > th dose independent rect. 11 10
565 27.27 temperature 15.0 90 > th dose independent rect. 15 17
581 27.29 wind 5.0 270 < th dose independent rect. 8 2
608 27.31 precipitation 0.1 270 < th dose independent rect. 13 17
611 27.31 precipitation 0.1 270 < th dose dependent rect. 13 17
613 27.32 atmosphere 1015.0 270 < th dose independent rect. 11 10
626 27.34 wind 7.0 270 < th dose independent rect. 17 9
629 27.34 radiation 40.0 90 < th dose independent rect. 13 19
635 27.35 wind 9.0 270 < th dose independent rect. 21 14
643 27.36 precipitation 0.1 270 < th dose independent rect. 10 22
647 27.36 precipitation 0.1 270 < th dose dependent rect. 10 22
648 27.37 radiation 1.0 270 > th dose independent rect. 8 2
668 27.38 radiation 1.0 270 < th dose independent rect. 2 9
671 27.38 temperature 15.0 10 > th dose independent rect. 14 18
676 27.39 temperature 15.0 270 > th dose independent rect. 6 7
684 27.40 temperature 15.0 90 > th dose independent rect. 8 5
687 27.40 atmosphere 1015.0 90 < th dose independent rect. 8 19
693 27.41 atmosphere 995.0 270 > th dose independent rect. 17 9
696 27.42 humidity 90.0 10 < th dose independent rect. 2 6
699 27.42 temperature 10.0 270 > th dose independent rect. 21 14
700 27.42 atmosphere 995.0 270 > th dose independent rect. 21 14
714 27.44 humidity 90.0 10 < th dose independent rect. 4 4
722 27.44 humidity 50.0 270 > th dose dependent rect. 18 8
725 27.45 wind 9.0 90 < th dose independent rect. 8 5
729 27.46 temperature 15.0 270 > th dose independent rect. 8 2
736 27.47 radiation 10.0 270 < th dose independent rect. 17 9
737 27.47 precipitation 0.1 270 < th dose independent rect. 11 10
740 27.47 humidity 50.0 270 > th dose dependent rect. 2 4
742 27.47 radiation 30.0 270 < th dose dependent rect. 17 9
744 27.47 precipitation 0.1 270 < th dose dependent rect. 11 10
747 27.48 precipitation 0.1 270 < th dose independent rect. 6 7
749 27.48 temperature 10.0 270 > th dose independent rect. 17 9
753 27.48 temperature 10.0 270 > th dose independent rect. 2 15
754 27.48 atmosphere 1015.0 270 < th dose independent rect. 2 15
762 27.48 precipitation 0.1 270 < th dose dependent rect. 6 7
765 27.49 atmosphere 995.0 270 > th dose independent rect. 6 7
766 27.49 atmosphere 1015.0 270 < th dose independent rect. 6 7
771 27.49 atmosphere 1015.0 90 < th dose independent rect. 13 19
773 27.49 atmosphere 1015.0 10 < th dose dependent rect. 4 4
780 27.50 humidity 50.0 270 > th dose independent rect. 21 14
790 27.51 precipitation 0.1 90 < th dose independent rect. 8 5
792 27.51 precipitation 0.1 90 < th dose independent rect. 13 19
793 27.51 temperature 15.0 270 > th dose independent rect. 11 20
796 27.51 precipitation 0.1 90 < th dose dependent rect. 8 5
797 27.51 precipitation 0.1 90 < th dose dependent rect. 13 19
800 27.52 atmosphere 995.0 90 > th dose independent rect. 8 5
801 27.52 atmosphere 1015.0 90 < th dose independent rect. 8 5
802 27.52 radiation 1.0 90 > th dose independent rect. 8 5
821 27.54 wind 1.0 270 > th dose independent rect. 11 10
857 27.57 precipitation 0.1 10 < th dose independent rect. 14 18
859 27.57 precipitation 0.1 10 < th dose dependent rect. 14 18
861 27.58 precipitation 0.1 270 < th dose independent rect. 8 2
884 27.58 precipitation 0.1 270 < th dose dependent rect. 8 2
897 27.60 atmosphere 995.0 270 > th dose independent rect. 8 2
898 27.60 atmosphere 1015.0 270 < th dose independent rect. 8 2
903 27.60 humidity 50.0 270 > th dose independent rect. 17 9
906 27.60 temperature 10.0 270 > th dose independent rect. 10 22
915 27.61 humidity 50.0 270 > th dose independent rect. 8 2
916 27.61 wind 1.0 90 > th dose independent rect. 8 5
940 27.61 precipitation 0.1 270 < th dose independent rect. 11 20
945 27.61 precipitation 0.1 270 < th dose dependent rect. 11 20
950 27.62 temperature 30.0 90 < th dose dependent rect. 3 5
992 27.64 precipitation 0.1 270 < th dose independent rect. 17 9
994 27.64 wind 1.0 90 > th dose independent rect. 8 19
995 27.64 temperature 10.0 270 > th dose dependent rect. 8 2
997 27.64 temperature 10.0 90 > th dose dependent rect. 8 5
999 27.64 precipitation 0.1 270 < th dose dependent rect. 17 9