Os03g0346500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0346500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.67 | 0.469 | 8.78 | -1.38 | 1.69 | -0.89 | -0.928 | -0.0195 | -0.652 | 15 | 0.78 | 10 | -- | -- |
| 98.86 | 0.467 | 8.79 | -1.38 | 1.71 | -0.89 | -0.933 | -- | -0.661 | 15.1 | 0.78 | 10 | -- | -- |
| 100.66 | 0.471 | 8.79 | -1.41 | 1.71 | -0.886 | -- | 0.405 | -0.67 | 15 | 0.78 | 10 | -- | -- |
| 101.73 | 0.473 | 8.79 | -1.4 | 1.72 | -0.876 | -- | -- | -0.667 | 15 | 0.78 | 10 | -- | -- |
| 118.81 | 0.508 | 8.8 | -1.42 | -- | -1.98 | -- | 0.709 | -0.741 | -- | 2.507 | 189 | -- | -- |
| 117.5 | 0.508 | 8.76 | -1.31 | 2.49 | -- | -0.736 | -- | -0.636 | 13.8 | -- | -- | -- | -- |
| 119.61 | 0.512 | 8.76 | -1.33 | 2.49 | -- | -- | -- | -0.641 | 13.8 | -- | -- | -- | -- |
| 120 | 0.51 | 8.8 | -1.46 | -- | -2.01 | -- | -- | -0.737 | -- | 2.43 | 189 | -- | -- |
| 152.3 | 0.575 | 8.77 | -- | 1.48 | -0.983 | -- | -- | -0.565 | 14.8 | 3.511 | 81 | -- | -- |
| 494.98 | 1.04 | 8.79 | -1.43 | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
| 166.13 | 0.603 | 8.73 | -- | 2.51 | -- | -- | -- | -0.493 | 13.8 | -- | -- | -- | -- |
| 175.81 | 0.618 | 8.76 | -- | -- | -2.01 | -- | -- | -0.579 | -- | 2.892 | 186 | -- | -- |
| 548.92 | 1.09 | 8.75 | -- | -- | -- | -- | -- | -0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.57 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 2 | 96.14 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 17 |
| 3 | 96.18 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 8 | 96.26 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 12 | 97.15 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 12 |
| 13 | 97.34 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 14 | 97.38 | radiation | 1 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 15 | 97.42 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 22 | 98.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 34 | 98.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 11 |
| 41 | 98.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 43 | 98.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 50 | 99.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 51 | 99.07 | temperature | 25 | 10 | > th | dose dependent | sin | 14 | NA |
| 54 | 99.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 55 | 99.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 13 |
| 57 | 99.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 68 | 99.26 | temperature | 10 | 90 | > th | dose dependent | rect. | 14 | 11 |
| 70 | 99.29 | radiation | 1 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 83 | 99.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 94 | 99.52 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 111 | 99.71 | temperature | 25 | 30 | > th | dose independent | rect. | 12 | 21 |
| 118 | 99.77 | temperature | 30 | 30 | < th | dose independent | sin | 14 | NA |
| 125 | 99.80 | radiation | 1 | 10 | < th | dose dependent | no | NA | NA |
| 133 | 99.80 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 134 | 99.80 | radiation | 1 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 153 | 99.90 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 5 |
| 219 | 100.19 | radiation | 1 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 238 | 100.27 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 23 |
| 245 | 100.31 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 246 | 100.31 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 15 |
| 293 | 100.32 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 300 | 100.35 | radiation | 1 | 90 | < th | dose independent | sin | 15 | NA |
| 359 | 100.52 | radiation | 1 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 383 | 100.60 | radiation | 1 | 30 | < th | dose dependent | sin | 15 | NA |
| 394 | 100.63 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 1 |
| 401 | 100.67 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 23 |
| 407 | 100.69 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 408 | 100.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 411 | 100.70 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 417 | 100.72 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 419 | 100.72 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 479 | 100.98 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 483 | 101.00 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 12 |
| 484 | 101.00 | temperature | 25 | 30 | > th | dose independent | rect. | 14 | 19 |
| 550 | 101.27 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 574 | 101.40 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 19 |
| 597 | 101.47 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 618 | 101.55 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 627 | 101.60 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 644 | 101.66 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 14 |
| 679 | 101.85 | radiation | 1 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 708 | 101.94 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 12 |
| 716 | 101.98 | radiation | 1 | 90 | > th | dose independent | sin | 15 | NA |
| 747 | 102.12 | radiation | 1 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 812 | 102.28 | radiation | 1 | 90 | > th | dose independent | rect. | 9 | 23 |
| 835 | 102.32 | radiation | 1 | 30 | < th | dose independent | rect. | 1 | 23 |
| 846 | 102.36 | temperature | 30 | 90 | > th | dose independent | sin | 16 | NA |
| 878 | 102.43 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 3 |
| 882 | 102.44 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 5 |
| 937 | 102.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 939 | 102.60 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 10 |
| 941 | 102.60 | radiation | 1 | 90 | > th | dose independent | rect. | 11 | 22 |
| 958 | 102.65 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 18 |