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Os03g0345700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0333) R2 : 0.553
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.62 (0.0683) R2dE : 0.55 R2E : 0.548
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.14 (0.0702) R2dN8 : 0.00501 R2N8 : 0.0033
σ : 0.627
deviance : 181.02
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.539
memory length : 309
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.43 0.599 10.3 0.231 0.989 1.16 0.306 -1.11 0.173 5.17 0.6364 63 -- --
169.18 0.606 10.3 0.187 0.996 1.12 -0.328 -- 0.144 4.81 0.6302 61 -- --
162.65 0.594 10.3 0.23 0.99 1.16 -- -1.06 0.171 5.13 0.6298 63 -- --
169.32 0.606 10.3 0.211 0.983 1.16 -- -- 0.16 5.12 0.63 61 -- --
175.08 0.616 10.3 0.425 -- 1.59 -- -1.08 0.116 -- 1.815 287 -- --
188.14 0.643 10.3 0.104 1.88 -- -1.01 -- 0.102 2.15 -- -- -- --
191.9 0.649 10.3 0.133 1.88 -- -- -- 0.108 2.21 -- -- -- --
179.18 0.623 10.3 0.265 -- 1.62 -- -- 0.169 -- 1.383 309 -- --
170.53 0.608 10.3 -- 0.977 1.15 -- -- 0.153 5.09 0.72 61 -- --
402.62 0.938 10.3 0.212 -- -- -- -- 0.153 -- -- -- -- --
192.37 0.649 10.3 -- 1.88 -- -- -- 0.0927 2.21 -- -- -- --
181.02 0.627 10.3 -- -- 1.62 -- -- 0.14 -- 1.539 309 -- --
403.8 0.938 10.3 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.48 temperature 25.0 90 > th dose independent rect. 16 11
3 155.65 temperature 25.0 90 < th dose independent rect. 13 15
6 156.39 temperature 25.0 90 < th dose independent rect. 15 13
9 157.16 temperature 20.0 10 > th dose dependent rect. 16 11
22 158.45 temperature 20.0 30 > th dose dependent rect. 16 9
33 159.13 radiation 1.0 30 < th dose independent rect. 19 23
36 159.39 radiation 1.0 30 > th dose independent rect. 16 20
37 159.46 radiation 1.0 30 < th dose independent rect. 21 23
40 159.68 radiation 1.0 30 < th dose dependent rect. 21 23
44 160.17 radiation 1.0 30 < th dose dependent rect. 19 23
50 160.75 radiation 1.0 720 > th dose independent rect. 13 17
52 160.89 temperature 25.0 90 < th dose independent sin 14 NA
58 161.48 radiation 1.0 30 > th dose independent rect. 9 23
59 161.69 temperature 30.0 30 < th dose dependent rect. 13 16
72 162.19 radiation 1.0 30 > th dose independent rect. 16 22
79 162.28 radiation 1.0 720 > th dose independent rect. 9 21
81 162.37 radiation 1.0 720 > th dose independent rect. 11 19
84 162.45 radiation 20.0 720 > th dose independent rect. 15 1
85 162.47 radiation 20.0 720 > th dose independent rect. 15 16
92 162.64 temperature 30.0 30 < th dose dependent rect. 17 12
110 162.75 humidity 80.0 1440 < th dose dependent rect. 6 6
117 162.82 temperature 30.0 720 > th dose independent rect. 13 1
121 162.88 humidity 80.0 1440 < th dose dependent rect. 21 15
126 162.96 radiation 1.0 90 > th dose independent rect. 7 23
143 163.15 humidity 80.0 1440 < th dose dependent sin 7 NA
150 163.21 radiation 1.0 30 < th dose independent rect. 1 23
170 163.39 radiation 1.0 720 < th dose dependent rect. 15 14
173 163.41 radiation 1.0 30 < th dose dependent rect. 1 23
180 163.47 wind 1.0 90 > th dose independent rect. 1 14
191 163.62 wind 1.0 90 > th dose independent rect. 3 12
198 163.67 humidity 80.0 720 < th dose independent rect. 6 13
219 164.01 radiation 1.0 720 < th dose independent rect. 13 17
230 164.05 radiation 1.0 720 < th dose independent rect. 15 15
233 164.08 radiation 1.0 720 < th dose independent rect. 11 19
236 164.09 humidity 80.0 1440 < th dose independent rect. 6 8
237 164.09 humidity 80.0 720 > th dose independent rect. 1 19
243 164.13 radiation 20.0 720 > th dose independent sin 14 NA
246 164.16 temperature 25.0 90 > th dose independent sin 14 NA
257 164.25 radiation 1.0 720 < th dose dependent rect. 11 18
260 164.27 temperature 20.0 10 > th dose dependent rect. 16 14
280 164.41 radiation 1.0 720 < th dose independent sin 14 NA
285 164.44 radiation 1.0 720 > th dose independent rect. 9 23
295 164.49 humidity 50.0 30 > th dose dependent rect. 12 17
314 164.61 radiation 1.0 30 > th dose independent rect. 13 23
324 164.67 humidity 50.0 1440 > th dose dependent rect. 5 9
347 164.83 humidity 80.0 1440 > th dose independent rect. 6 8
353 164.84 radiation 1.0 720 < th dose dependent rect. 17 1
357 164.90 humidity 80.0 720 < th dose independent sin 0 NA
369 164.95 humidity 80.0 1440 < th dose independent rect. 2 12
381 165.02 humidity 80.0 1440 > th dose independent rect. 2 12
383 165.02 radiation 1.0 30 < th dose independent rect. 23 23
395 165.10 radiation 1.0 720 > th dose independent sin 14 NA
418 165.14 temperature 20.0 720 < th dose independent rect. 24 6
449 165.20 radiation 1.0 30 < th dose dependent rect. 23 23
473 165.28 radiation 1.0 90 < th dose dependent rect. 11 23
484 165.31 radiation 20.0 720 < th dose dependent rect. 15 16
486 165.32 radiation 1.0 720 < th dose independent rect. 21 23
500 165.36 humidity 80.0 720 > th dose independent rect. 1 21
501 165.36 radiation 1.0 90 < th dose independent rect. 5 23
508 165.39 radiation 1.0 720 < th dose independent rect. 17 1
517 165.41 radiation 1.0 90 < th dose dependent no NA NA
523 165.42 radiation 1.0 90 < th dose dependent rect. 9 23
524 165.43 radiation 1.0 720 > th dose independent rect. 13 6
572 165.56 radiation 1.0 90 < th dose dependent rect. 5 23
579 165.58 humidity 70.0 1440 > th dose independent rect. 20 16
581 165.59 temperature 20.0 720 > th dose independent rect. 1 4
588 165.60 humidity 70.0 1440 > th dose independent rect. 22 14
589 165.60 radiation 1.0 90 < th dose dependent rect. 15 23
597 165.63 radiation 1.0 30 < th dose independent rect. 7 23
598 165.63 radiation 1.0 720 > th dose dependent rect. 15 2
625 165.72 radiation 1.0 30 < th dose independent rect. 17 23
628 165.74 temperature 20.0 720 > th dose independent rect. 3 1
633 165.74 radiation 10.0 720 > th dose dependent rect. 15 16
636 165.75 radiation 1.0 30 > th dose independent no NA NA
637 165.75 radiation 1.0 30 > th dose independent rect. 5 14
693 165.76 radiation 1.0 30 < th dose independent no NA NA
695 165.76 radiation 1.0 30 < th dose independent rect. 11 21
701 165.76 radiation 1.0 30 < th dose independent rect. 13 23
702 165.76 radiation 1.0 30 < th dose independent rect. 15 23
711 165.80 humidity 50.0 720 > th dose dependent rect. 17 21
717 165.82 radiation 1.0 30 > th dose independent rect. 11 23
730 165.88 radiation 20.0 720 < th dose dependent rect. 15 14
739 165.92 humidity 70.0 720 > th dose dependent rect. 8 20
751 165.94 humidity 90.0 720 < th dose dependent rect. 18 22
754 165.95 radiation 1.0 30 < th dose independent rect. 13 19
757 165.95 humidity 80.0 720 > th dose independent rect. 23 21
773 165.98 radiation 1.0 30 < th dose dependent rect. 7 23
784 166.02 radiation 1.0 720 < th dose dependent sin 15 NA
823 166.12 radiation 1.0 720 < th dose dependent sin 21 NA
831 166.14 wind 5.0 4320 > th dose dependent rect. 13 1
835 166.15 precipitation 0.1 720 < th dose independent rect. 5 16
837 166.15 precipitation 0.1 720 < th dose dependent rect. 5 16
847 166.19 humidity 80.0 1440 < th dose independent sin 4 NA
856 166.21 humidity 60.0 30 > th dose independent rect. 12 17
873 166.26 humidity 70.0 1440 > th dose independent sin 7 NA
874 166.26 radiation 30.0 720 < th dose dependent sin 14 NA
889 166.29 radiation 40.0 720 < th dose dependent rect. 13 16
894 166.31 wind 7.0 4320 < th dose independent rect. 13 1
900 166.33 temperature 25.0 270 < th dose independent rect. 4 8
903 166.34 radiation 1.0 720 < th dose independent rect. 1 17
934 166.38 humidity 50.0 1440 > th dose dependent rect. 11 1
949 166.44 humidity 80.0 1440 > th dose independent sin 3 NA
951 166.44 wind 7.0 4320 > th dose dependent rect. 15 1
966 166.48 wind 7.0 4320 > th dose independent rect. 13 1
978 166.50 radiation 1.0 720 > th dose independent rect. 11 8
995 166.50 humidity 70.0 720 > th dose dependent rect. 1 21