Os03g0343900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II protein PsbX family protein.
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Os03g0343900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II protein PsbX family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.67 | 0.398 | 16.5 | -1.45 | 0.491 | 0.995 | 1.57 | 1.44 | -0.739 | 23.3 | 21 | 875 | -- | -- |
| 77.18 | 0.409 | 16.5 | -1.58 | 0.442 | 0.813 | 1.9 | -- | -0.764 | 22.9 | 22.1 | 903 | -- | -- |
| 80.12 | 0.417 | 16.4 | -1.25 | 0.47 | 0.944 | -- | 2.15 | -0.693 | 23.7 | 21.49 | 821 | -- | -- |
| 91.57 | 0.446 | 16.5 | -1.76 | 0.486 | 0.776 | -- | -- | -0.834 | 23.5 | 22.1 | 903 | -- | -- |
| 92.2 | 0.447 | 16.4 | -1.17 | -- | 0.993 | -- | 2.19 | -0.71 | -- | 21.9 | 875 | -- | -- |
| 100.84 | 0.471 | 16.5 | -1.43 | 0.638 | -- | 1.91 | -- | -0.585 | 23 | -- | -- | -- | -- |
| 116.19 | 0.505 | 16.5 | -1.51 | 0.628 | -- | -- | -- | -0.593 | 23.3 | -- | -- | -- | -- |
| 105.56 | 0.479 | 16.5 | -1.84 | -- | 0.896 | -- | -- | -0.852 | -- | 21.81 | 872 | -- | -- |
| 170.67 | 0.608 | 16.5 | -- | 0.635 | 0.551 | -- | -- | -0.685 | 23 | 22.4 | 862 | -- | -- |
| 140.91 | 0.555 | 16.4 | -1.49 | -- | -- | -- | -- | -0.587 | -- | -- | -- | -- | -- |
| 176.03 | 0.621 | 16.4 | -- | 0.614 | -- | -- | -- | -0.425 | 23.1 | -- | -- | -- | -- |
| 184.64 | 0.633 | 16.4 | -- | -- | 0.535 | -- | -- | -0.593 | -- | 22.3 | 889 | -- | -- |
| 199.55 | 0.659 | 16.4 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 30 | 71.91 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 34 | 71.97 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 42 | 72.13 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 58 | 72.50 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 59 | 72.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 64 | 72.62 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 87 | 72.80 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 109 | 72.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 118 | 73.08 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 133 | 73.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 161 | 73.39 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 170 | 73.47 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 16 |
| 171 | 73.48 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 198 | 73.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 223 | 73.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 231 | 73.76 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 15 |
| 286 | 73.98 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 338 | 74.25 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 19 |
| 444 | 74.62 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 17 |
| 472 | 74.74 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 552 | 75.06 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 22 |
| 569 | 75.12 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 630 | 75.30 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 635 | 75.32 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 17 |
| 659 | 75.39 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 842 | 75.86 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 22 |
| 877 | 75.96 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 973 | 76.15 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 984 | 76.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 991 | 76.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |