Os03g0343800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0343800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.91 | 0.689 | 6.72 | -1.02 | 0.482 | -6.85 | 2.25 | -12.7 | -0.28 | 2.74 | 0.7035 | 1073 | 9.2 | 8.19 |
| 267.61 | 0.762 | 6.82 | -0.408 | 0.191 | -3.93 | 2.97 | -- | -0.124 | 3.49 | 0.06822 | 588 | 9.25 | 5.98 |
| 228.53 | 0.704 | 6.74 | -1.11 | 0.596 | -6.8 | -- | -11.4 | -0.329 | 3.57 | 0.6267 | 1038 | 9.15 | 8.19 |
| 260.96 | 0.752 | 6.77 | -0.556 | 0.48 | -3.54 | -- | -- | -0.199 | 5.7 | 0.7899 | 1034 | 10.7 | 7.17 |
| 240.7 | 0.723 | 6.71 | -1.36 | -- | -7.78 | -- | -14.2 | -0.321 | -- | 0.3653 | 1060 | 9.02 | 8.33 |
| 292.62 | 0.802 | 6.84 | -0.197 | 0.306 | -- | 2.44 | -- | -0.0741 | 2.35 | -- | -- | -- | -- |
| 310.3 | 0.825 | 6.84 | -0.267 | 0.433 | -- | -- | -- | -0.092 | 4.97 | -- | -- | -- | -- |
| 253.88 | 0.742 | 6.89 | -0.841 | -- | -2.49 | -- | -- | -0.259 | -- | 0.83 | 1104 | 10.7 | 7.1 |
| 254.26 | 0.743 | 6.88 | -- | 0.554 | -2.28 | -- | -- | -0.296 | 4.26 | 1.867 | 1060 | 10.5 | 7.3 |
| 320.18 | 0.836 | 6.85 | -0.251 | -- | -- | -- | -- | -0.0809 | -- | -- | -- | -- | -- |
| 312.18 | 0.826 | 6.83 | -- | 0.429 | -- | -- | -- | -0.0622 | 4.99 | -- | -- | -- | -- |
| 269.16 | 0.764 | 6.88 | -- | -- | -2.15 | -- | -- | -0.214 | -- | 1.7 | 1060 | 10.6 | 7.09 |
| 321.85 | 0.837 | 6.84 | -- | -- | -- | -- | -- | -0.053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.02 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 2 | 229.04 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 3 | 229.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 5 | 229.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 6 | 229.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 11 | 230.98 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 20 | 233.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 21 | 233.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 24 | 233.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 25 | 233.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 27 | 233.73 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 36 | 235.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 38 | 235.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 40 | 235.14 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 91 | 235.14 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 93 | 235.14 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 95 | 235.14 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 160 | 236.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 161 | 236.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 165 | 236.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 167 | 236.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 173 | 236.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 174 | 236.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 179 | 236.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 188 | 236.73 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 256 | 237.57 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 262 | 237.76 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 276 | 238.37 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 310 | 239.24 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 314 | 239.39 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 320 | 239.49 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 352 | 239.96 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 369 | 240.13 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 382 | 240.29 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 392 | 240.29 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 472 | 241.50 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 476 | 241.96 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 490 | 242.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 491 | 242.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 495 | 242.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 496 | 242.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 509 | 242.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 542 | 242.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 545 | 242.75 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 550 | 242.89 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 563 | 243.15 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 579 | 243.32 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 616 | 243.50 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 644 | 243.67 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 655 | 243.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 656 | 243.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 657 | 243.97 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 663 | 244.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 665 | 244.05 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 718 | 244.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 741 | 244.78 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 783 | 245.09 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 818 | 245.38 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 821 | 245.39 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 832 | 245.48 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 879 | 245.73 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 883 | 245.75 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 896 | 245.81 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 929 | 245.94 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 938 | 246.00 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 939 | 246.02 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 943 | 246.04 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 969 | 246.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 979 | 246.23 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |