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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0343400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photolyase/blue-light receptor PHR2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.13 (0.058) R2 : 0.359
β1 : 1.04 (0.302) R2dD : 0.0594 R2D : -0.119
β2 : 0.853 (0.108) R2dC : 0.0876 R2C : 0.0986
β3 : -0.578 (0.178) R2dE : 0.02 R2E : 0.0683
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.16 (0.893) R2dD*E : 0.231 R2D*E : 0.13
γ1 : -0.48 (0.123) R2dN8 : 0.0473 R2N8 : 0.0883
σ : 0.842
deviance : 326.68
__
_____
C
peak time of C : 12.3
E
wheather : temperature
threshold : 18.42
memory length : 3952
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.82 0.848 5.13 1.1 0.841 -0.604 0.517 6.36 -0.468 12.4 19.28 3915 -- --
360.37 0.891 5.38 -0.706 1.06 -0.746 0.277 -- -0.95 12.7 13 39769 -- --
326.68 0.842 5.13 1.04 0.853 -0.578 -- 6.16 -0.48 12.3 18.42 3952 -- --
360.7 0.89 5.38 -0.698 1.06 -0.734 -- -- -0.95 12.7 12.4 24156 -- --
369.81 0.896 5.17 0.983 -- -0.759 -- 5.8 -0.495 -- 18.3 3827 -- --
365.67 0.896 5.4 -0.848 0.874 -- 0.207 -- -1.05 12.3 -- -- -- --
365.86 0.896 5.4 -0.84 0.873 -- -- -- -1.05 12.3 -- -- -- --
398.47 0.93 5.34 -0.314 -- -1 -- -- -0.746 -- 10.47 8119 -- --
366.33 0.891 5.33 -- 0.86 -0.686 -- -- -0.755 12.3 4.152 47520 -- --
413.83 0.951 5.42 -0.87 -- -- -- -- -1.07 -- -- -- -- --
384.47 0.917 5.38 -- 0.886 -- -- -- -0.959 12.4 -- -- -- --
400.69 0.932 5.34 -- -- -1.17 -- -- -0.741 -- 11 6740 -- --
433.78 0.972 5.4 -- -- -- -- -- -0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.90 wind 1.0 43200 < th dose independent rect. 9 2
2 299.99 wind 1.0 43200 > th dose independent rect. 9 2
5 306.45 wind 1.0 43200 < th dose dependent rect. 9 2
6 308.50 wind 3.0 43200 > th dose independent rect. 13 1
7 308.68 wind 5.0 43200 < th dose dependent rect. 13 1
8 308.84 wind 3.0 43200 < th dose independent rect. 13 1
9 310.35 wind 1.0 43200 < th dose dependent rect. 11 1
14 311.82 humidity 90.0 14400 > th dose dependent rect. 5 1
18 312.80 wind 1.0 43200 > th dose independent rect. 11 1
22 312.88 wind 1.0 43200 < th dose independent rect. 2 1
25 313.08 wind 1.0 43200 > th dose independent rect. 2 1
33 313.80 wind 1.0 43200 < th dose dependent rect. 10 16
37 314.05 radiation 1.0 14400 < th dose dependent rect. 4 1
56 315.14 wind 1.0 43200 < th dose dependent rect. 2 1
66 315.49 radiation 1.0 14400 < th dose dependent rect. 22 7
92 316.47 wind 3.0 43200 < th dose dependent rect. 18 4
107 316.78 wind 1.0 43200 > th dose dependent rect. 13 3
131 317.24 wind 3.0 43200 > th dose independent rect. 11 10
142 317.52 wind 3.0 43200 < th dose independent rect. 11 11
145 317.55 wind 3.0 43200 < th dose dependent rect. 20 1
159 317.75 wind 3.0 43200 < th dose dependent rect. 19 6
206 318.15 radiation 40.0 43200 < th dose dependent rect. 23 6
227 318.33 humidity 90.0 14400 < th dose independent rect. 24 1
292 318.87 wind 1.0 43200 > th dose independent rect. 24 1
301 318.93 humidity 90.0 14400 > th dose dependent rect. 3 5
333 319.26 radiation 1.0 14400 > th dose independent rect. 18 1
348 319.30 humidity 80.0 43200 > th dose dependent rect. 10 1
353 319.31 precipitation 0.1 43200 > th dose dependent rect. 5 5
354 319.33 precipitation 0.1 43200 > th dose independent rect. 5 5
355 319.36 wind 5.0 43200 < th dose dependent sin 19 NA
356 319.38 temperature 30.0 43200 < th dose dependent rect. 9 3
361 319.40 humidity 90.0 14400 > th dose dependent rect. 2 7
362 319.40 radiation 30.0 43200 < th dose dependent rect. 20 9
363 319.41 temperature 30.0 43200 < th dose dependent rect. 10 1
366 319.42 precipitation 0.1 43200 > th dose dependent rect. 5 2
376 319.48 precipitation 0.1 43200 > th dose independent rect. 5 2
377 319.48 temperature 25.0 43200 < th dose dependent rect. 21 1
394 319.55 precipitation 0.1 43200 < th dose independent rect. 4 3
395 319.55 precipitation 0.1 43200 < th dose independent rect. 5 5
398 319.55 precipitation 0.1 43200 < th dose dependent rect. 4 3
399 319.55 precipitation 0.1 43200 < th dose dependent rect. 5 5
427 319.66 temperature 25.0 43200 < th dose independent rect. 13 1
431 319.68 wind 3.0 43200 > th dose independent sin 19 NA
434 319.70 radiation 1.0 43200 < th dose independent rect. 18 11
443 319.73 temperature 10.0 43200 > th dose dependent rect. 9 1
459 319.81 wind 3.0 43200 < th dose independent sin 20 NA
467 319.85 humidity 90.0 43200 > th dose independent rect. 9 2
481 319.88 humidity 80.0 43200 > th dose dependent rect. 10 3
489 319.90 temperature 25.0 43200 > th dose independent rect. 13 1
492 319.90 wind 1.0 43200 > th dose independent rect. 8 18
517 319.96 radiation 1.0 14400 < th dose dependent rect. 18 14
537 320.02 radiation 1.0 14400 < th dose independent rect. 18 8
545 320.04 radiation 1.0 14400 < th dose dependent rect. 18 8
548 320.05 radiation 1.0 43200 < th dose dependent rect. 7 1
555 320.07 humidity 90.0 14400 > th dose independent rect. 22 6
558 320.07 temperature 25.0 43200 < th dose dependent rect. 4 1
570 320.10 radiation 1.0 14400 < th dose dependent rect. 18 1
578 320.11 radiation 1.0 14400 < th dose dependent rect. 18 3
585 320.12 temperature 25.0 43200 < th dose independent rect. 10 6
592 320.13 temperature 25.0 43200 < th dose dependent rect. 2 9
594 320.14 radiation 1.0 14400 < th dose independent rect. 18 1
601 320.16 radiation 1.0 14400 < th dose independent rect. 18 3
631 320.20 temperature 25.0 43200 < th dose dependent rect. 20 15
647 320.23 humidity 80.0 43200 > th dose dependent rect. 12 1
673 320.26 wind 1.0 43200 < th dose dependent sin 18 NA
684 320.28 temperature 10.0 43200 > th dose dependent rect. 4 1
686 320.28 temperature 25.0 43200 < th dose dependent rect. 20 9
710 320.31 temperature 25.0 43200 < th dose dependent sin 7 NA
721 320.32 radiation 1.0 43200 < th dose independent rect. 7 2
722 320.32 humidity 90.0 14400 > th dose independent rect. 22 9
790 320.38 humidity 90.0 43200 < th dose independent rect. 9 2
791 320.38 radiation 1.0 43200 > th dose independent rect. 7 2
793 320.38 temperature 15.0 43200 > th dose dependent rect. 21 1
812 320.40 humidity 80.0 43200 > th dose independent rect. 19 5
819 320.40 temperature 10.0 43200 > th dose dependent rect. 2 10
919 320.49 humidity 90.0 43200 > th dose independent rect. 9 5
996 320.55 temperature 10.0 43200 > th dose dependent rect. 21 15