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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0341300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MtN3 and saliva related transmembrane protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0588) R2 : 0.649
β1 : -4.18 (0.377) R2dD : 0.63 R2D : -0.121
β2 : 2.08 (0.102) R2dC : 0.324 R2C : 0.248
β3 : 2.86 (0.184) R2dE : 0.46 R2E : 0.0182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.32 (1.34) R2dD*E : 0.159 R2D*E : -0.42
γ1 : -0.339 (0.122) R2dN8 : 0.0157 R2N8 : -0.0538
σ : 0.761
deviance : 267.06
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_____
C
peak time of C : 8.68
E
wheather : temperature
threshold : 25.32
memory length : 1267
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.18 0.767 10.4 -4.19 2.07 2.84 0.545 -7.24 -0.322 8.64 25.4 1278 -- --
282.61 0.783 10.2 -2.32 2.1 2.14 0.603 -- 0.131 8.7 25.62 1230 -- --
267.06 0.761 10.4 -4.18 2.08 2.86 -- -7.32 -0.339 8.68 25.32 1267 -- --
284.35 0.785 10.2 -2.3 2.09 2.12 -- -- 0.142 8.69 25.44 1240 -- --
492.28 1.03 10.5 -4.16 -- 2.64 -- -6.41 -0.467 -- 24.19 1393 -- --
450.93 0.996 10.1 -1.66 1.99 -- 0.807 -- 0.336 7.97 -- -- -- --
452.83 0.997 10.2 -1.63 1.98 -- -- -- 0.336 8 -- -- -- --
508.44 1.05 10.2 -2.26 -- 1.91 -- -- 0.141 -- 24.92 1395 -- --
412.31 0.946 10 -- 2.21 1.73 -- -- 0.744 8.46 28.17 1152 -- --
667.76 1.21 10.2 -1.61 -- -- -- -- 0.361 -- -- -- -- --
523.13 1.07 10.1 -- 1.97 -- -- -- 0.517 8.06 -- -- -- --
634.95 1.17 10.2 -- -- 1.42 -- -- 0.559 -- 26.7 1383 -- --
736.45 1.27 10.2 -- -- -- -- -- 0.54 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.68 temperature 25 1440 > th dose dependent rect. 15 2
2 259.70 temperature 25 1440 > th dose dependent rect. 13 6
37 263.10 radiation 1 1440 < th dose dependent rect. 9 21
65 264.46 temperature 25 1440 > th dose dependent sin 18 NA
81 265.01 radiation 1 1440 < th dose dependent rect. 8 19
92 265.46 radiation 1 1440 < th dose dependent rect. 8 14
147 266.59 radiation 1 1440 < th dose dependent sin 16 NA
286 271.68 radiation 1 1440 < th dose independent rect. 11 19
354 272.53 temperature 25 1440 > th dose dependent no NA NA
380 273.87 radiation 1 1440 > th dose independent rect. 11 19
398 274.89 radiation 1 720 < th dose dependent rect. 5 22
406 275.17 radiation 1 1440 < th dose dependent rect. 5 20
411 275.27 radiation 1 1440 < th dose dependent rect. 5 17
441 276.14 radiation 1 1440 < th dose dependent rect. 23 23
444 276.20 radiation 1 1440 < th dose dependent no NA NA
446 276.20 radiation 1 1440 < th dose dependent rect. 2 23
448 276.20 radiation 1 1440 < th dose dependent rect. 11 23
452 276.23 radiation 1 1440 < th dose dependent rect. 20 23
459 276.30 radiation 1 1440 < th dose dependent rect. 2 20
508 277.15 radiation 1 1440 < th dose dependent rect. 17 23
528 279.19 wind 7 43200 < th dose independent rect. 10 11
532 279.25 wind 7 43200 > th dose independent rect. 10 11
537 279.37 radiation 1 1440 < th dose independent sin 15 NA
567 280.45 wind 5 43200 > th dose dependent rect. 11 11
587 281.55 radiation 1 1440 > th dose independent sin 15 NA
591 281.71 wind 7 43200 > th dose independent sin 20 NA
594 281.78 wind 7 43200 < th dose independent sin 21 NA
604 282.09 wind 7 43200 > th dose independent rect. 10 15
654 283.04 radiation 1 1440 < th dose independent rect. 11 16
659 283.10 wind 5 43200 > th dose dependent rect. 11 5
668 283.23 radiation 1 1440 < th dose independent rect. 11 14
690 283.44 radiation 1 1440 < th dose independent rect. 11 11
843 284.96 wind 5 43200 > th dose dependent rect. 10 8
854 285.04 wind 7 43200 < th dose independent rect. 10 6
861 285.10 radiation 1 1440 > th dose independent rect. 11 8
967 285.86 wind 7 43200 > th dose independent rect. 10 6