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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0340300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0259) R2 : 0.475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.48 (0.176) R2dE : 0.461 R2E : 0.471
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0907 (0.055) R2dN8 : 0.00413 R2N8 : 0.0142
σ : 0.486
deviance : 108.72
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 65.38
memory length : 1873
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.11 0.453 3.1 -1.5 0.197 0.879 -1.68 -6.85 -0.447 15.8 47.05 1673 -- --
94.29 0.452 3.04 -0.506 0.293 2.83 -1.87 -- -0.146 16 64.82 1786 -- --
98.77 0.463 3.1 -1.63 0.198 0.895 -- -7.61 -0.501 13.8 47.56 1955 -- --
101.43 0.469 3.06 -0.538 0.182 3.05 -- -- -0.181 15.6 64.26 1872 -- --
100.49 0.467 3.12 -1.7 -- 0.894 -- -7.44 -0.5 -- 46.81 1957 -- --
142.83 0.56 3.1 -1.18 0.312 -- -2.07 -- -0.363 15.2 -- -- -- --
156 0.585 3.1 -1.22 0.315 -- -- -- -0.376 13.7 -- -- -- --
103.46 0.474 3.06 -0.51 -- 3.08 -- -- -0.167 -- 64.31 1875 -- --
106.43 0.48 3.04 -- 0.169 3.49 -- -- -0.0948 14.5 65.2 1872 -- --
162.05 0.595 3.1 -1.23 -- -- -- -- -0.383 -- -- -- -- --
195.35 0.654 3.07 -- 0.337 -- -- -- -0.24 13.8 -- -- -- --
108.72 0.486 3.04 -- -- 3.48 -- -- -0.0907 -- 65.38 1873 -- --
202.26 0.664 3.07 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.50 radiation 30 1440 < th dose independent rect. 16 9
4 94.23 radiation 30 1440 < th dose independent rect. 16 4
5 94.31 radiation 30 1440 < th dose independent rect. 16 13
7 94.60 radiation 30 1440 < th dose independent rect. 16 7
16 97.70 humidity 60 43200 < th dose dependent rect. 19 5
34 100.55 humidity 50 43200 < th dose independent rect. 20 8
35 100.72 humidity 50 43200 < th dose independent rect. 20 1
42 101.30 wind 1 14400 < th dose dependent rect. 18 1
43 101.65 radiation 10 1440 < th dose independent rect. 16 1
59 102.39 humidity 50 43200 > th dose independent rect. 20 7
60 102.39 radiation 40 4320 < th dose independent rect. 15 17
62 102.41 radiation 10 1440 < th dose independent rect. 15 16
65 102.52 humidity 50 43200 > th dose independent rect. 20 5
70 102.63 radiation 40 90 > th dose dependent rect. 10 2
77 102.84 humidity 50 43200 > th dose independent rect. 20 3
93 103.70 radiation 40 14400 < th dose independent rect. 17 15
100 103.93 radiation 40 10 > th dose dependent rect. 11 1
101 103.94 radiation 40 14400 < th dose independent rect. 22 10
107 104.03 radiation 40 14400 < th dose independent rect. 6 2
118 104.20 radiation 40 14400 < th dose independent rect. 24 8
123 104.31 wind 9 43200 > th dose dependent rect. 22 3
126 104.36 radiation 10 1440 < th dose independent sin 13 NA
130 104.40 radiation 10 1440 < th dose independent rect. 16 9
131 104.41 radiation 10 1440 < th dose independent rect. 16 4
134 104.43 radiation 10 1440 < th dose independent rect. 16 7
142 104.53 radiation 40 14400 < th dose independent rect. 4 4
154 104.78 radiation 40 90 > th dose dependent rect. 10 6
173 104.82 radiation 40 10 > th dose independent rect. 11 1
175 104.86 radiation 40 14400 < th dose independent rect. 2 6
202 105.25 wind 1 14400 < th dose independent rect. 18 1
203 105.27 radiation 30 1440 < th dose independent rect. 11 1
205 105.31 radiation 40 1440 > th dose dependent rect. 14 21
211 105.54 radiation 1 4320 < th dose independent rect. 8 1
213 105.54 radiation 1 4320 < th dose dependent rect. 8 1
218 105.68 radiation 10 1440 > th dose dependent rect. 10 2
221 105.75 radiation 40 1440 > th dose dependent rect. 10 1
224 105.79 radiation 20 1440 < th dose independent rect. 15 21
225 105.82 humidity 50 43200 > th dose independent rect. 20 13
231 106.00 radiation 40 90 > th dose dependent rect. 13 23
239 106.19 radiation 40 90 > th dose independent rect. 10 2
248 106.36 radiation 40 1440 > th dose dependent rect. 14 23
249 106.37 wind 7 43200 > th dose dependent rect. 7 1
254 106.40 atmosphere 995 43200 > th dose independent rect. 13 1
255 106.43 atmosphere 995 43200 < th dose independent rect. 12 1
258 106.43 atmosphere 995 43200 < th dose dependent rect. 12 1
284 106.58 radiation 1 1440 > th dose dependent rect. 15 21
293 106.77 radiation 1 4320 > th dose independent rect. 8 1
299 106.85 atmosphere 1015 43200 > th dose independent rect. 19 1
314 107.02 wind 1 14400 < th dose dependent rect. 15 2
315 107.03 radiation 30 14400 > th dose dependent rect. 7 1
344 107.15 atmosphere 995 43200 < th dose independent rect. 9 5
350 107.25 wind 9 43200 > th dose dependent rect. 22 5
357 107.35 wind 1 14400 > th dose independent rect. 15 1
360 107.41 radiation 40 1440 > th dose dependent rect. 10 3
391 107.55 atmosphere 995 43200 < th dose dependent rect. 9 6
415 107.70 temperature 15 43200 < th dose dependent rect. 5 3
424 107.76 radiation 40 1440 > th dose dependent sin 4 NA
430 107.78 radiation 40 1440 > th dose dependent rect. 10 23
431 107.79 radiation 40 90 > th dose dependent sin 0 NA
461 107.91 temperature 15 43200 < th dose dependent rect. 3 14
475 107.96 wind 1 14400 < th dose independent rect. 15 2
477 107.96 radiation 40 1440 > th dose dependent rect. 8 5
505 108.04 temperature 10 43200 < th dose independent rect. 3 1
519 108.10 radiation 40 1440 > th dose dependent no NA NA
520 108.10 radiation 40 1440 > th dose dependent rect. 8 8
657 108.11 radiation 40 1440 < th dose dependent rect. 11 1
664 108.16 radiation 10 720 < th dose independent rect. 20 22
666 108.17 radiation 10 720 < th dose independent rect. 5 19
667 108.18 temperature 15 43200 < th dose dependent sin 1 NA
672 108.20 radiation 40 90 > th dose dependent no NA NA
817 108.22 radiation 1 1440 > th dose dependent rect. 16 15
821 108.25 radiation 10 720 < th dose independent rect. 2 22
870 108.31 temperature 10 43200 > th dose independent rect. 2 1
898 108.35 radiation 40 1440 > th dose dependent rect. 10 6
932 108.36 temperature 10 43200 > th dose independent rect. 2 3
974 108.45 temperature 10 43200 < th dose dependent rect. 3 1
996 108.56 radiation 40 1440 < th dose independent rect. 14 23