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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0339900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.0325) R2 : 0.946
β1 : -1.31 (0.119) R2dD : 0.0148 R2D : 0.0165
β2 : 3.45 (0.138) R2dC : 0.206 R2C : 0.618
β3 : -3.25 (0.106) R2dE : 0.315 R2E : 0.723
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.039 (0.0695) R2dN8 : 5.08e-05 R2N8 : -0.000515
σ : 0.606
deviance : 169.36
__
_____
C
peak time of C : 15.9
E
wheather : temperature
threshold : 29.48
memory length : 261
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 13.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160 0.594 6.94 -1.28 3.41 -3.3 0.675 1.62 0.0501 16 29.49 264 16 13.9
165.79 0.6 6.94 -1.29 3.44 -3.26 -1.12 -- 0.0432 15.9 29.5 263 16 13.9
160.32 0.59 6.93 -1.27 3.42 -3.31 -- 1.29 0.0725 16 29.5 263 16 13.8
169.36 0.606 6.94 -1.31 3.45 -3.25 -- -- 0.039 15.9 29.48 261 16 13.9
262.08 0.754 6.91 -0.766 -- -6 -- 2.42 0.0672 -- 52.07 377 16.8 13.4
255.4 0.749 6.95 -1.17 7 -- -1.05 -- -0.142 14.8 -- -- -- --
259.24 0.754 6.95 -1.19 7 -- -- -- -0.148 14.8 -- -- -- --
242.39 0.725 6.94 -1.21 -- -6.23 -- -- -0.148 -- 89.27 405 16.8 13.1
215.37 0.684 6.92 -- 3.48 -3.21 -- -- 0.148 15.9 30.1 261 16.1 13.9
3097.46 2.6 6.99 -1.49 -- -- -- -- -0.327 -- -- -- -- --
296.84 0.806 6.92 -- 7.02 -- -- -- -0.0149 14.8 -- -- -- --
280.1 0.779 6.92 -- -- -6.25 -- -- -0.00943 -- 96.67 402 16.7 13.2
3156.24 2.62 6.95 -- -- -- -- -- -0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.86 radiation 20.0 270 < th dose dependent rect. 16 14
3 162.87 temperature 10.0 270 > th dose dependent rect. 11 14
4 163.06 temperature 30.0 270 < th dose independent rect. 16 14
6 165.50 temperature 30.0 270 < th dose independent rect. 1 20
7 166.64 temperature 10.0 90 > th dose dependent rect. 13 14
9 168.33 temperature 30.0 270 < th dose independent rect. 2 18
10 168.60 radiation 10.0 270 < th dose independent rect. 16 14
18 172.09 humidity 60.0 270 > th dose independent rect. 16 14
23 173.17 temperature 30.0 270 < th dose dependent rect. 16 4
30 174.63 temperature 30.0 90 < th dose dependent rect. 16 7
32 175.25 temperature 30.0 270 < th dose dependent rect. 17 2
36 175.67 temperature 10.0 10 > th dose dependent rect. 14 13
39 175.77 temperature 30.0 270 < th dose independent rect. 15 6
43 176.25 temperature 30.0 270 < th dose independent rect. 16 4
56 177.14 temperature 30.0 10 < th dose dependent rect. 16 6
59 177.43 temperature 10.0 720 > th dose dependent rect. 13 4
110 182.17 temperature 10.0 270 > th dose dependent rect. 6 20
112 182.22 temperature 30.0 90 < th dose dependent rect. 13 10
115 182.32 temperature 30.0 270 < th dose independent rect. 10 11
118 182.64 temperature 30.0 30 < th dose dependent rect. 17 14
126 182.73 radiation 1.0 270 < th dose dependent rect. 17 2
128 182.75 radiation 1.0 270 < th dose independent rect. 16 3
131 182.87 temperature 15.0 720 > th dose dependent rect. 15 1
163 184.34 temperature 30.0 10 < th dose dependent rect. 14 8
187 185.18 temperature 30.0 10 < th dose dependent rect. 12 10
212 185.89 humidity 70.0 270 > th dose independent rect. 16 4
222 186.32 radiation 1.0 90 < th dose independent rect. 3 20
226 186.44 humidity 50.0 270 > th dose dependent rect. 16 4
248 186.96 humidity 70.0 270 > th dose independent rect. 17 2
290 188.43 atmosphere 995.0 270 > th dose independent rect. 17 13
300 188.64 radiation 1.0 90 > th dose independent sin 22 NA
304 188.79 radiation 1.0 90 > th dose independent rect. 6 23
306 188.85 humidity 50.0 270 > th dose dependent rect. 17 2
314 189.04 precipitation 0.1 270 < th dose independent rect. 6 11
315 189.04 radiation 1.0 90 > th dose independent rect. 6 13
326 189.04 precipitation 0.1 270 < th dose dependent rect. 6 11
335 189.28 radiation 1.0 90 < th dose dependent rect. 4 19
366 190.08 wind 9.0 270 < th dose independent rect. 6 11
385 190.57 radiation 1.0 90 < th dose independent sin 22 NA
390 190.74 radiation 1.0 90 < th dose dependent sin 22 NA
397 190.89 radiation 1.0 270 < th dose independent rect. 1 21
405 191.01 temperature 10.0 270 > th dose independent rect. 6 11
406 191.01 atmosphere 1015.0 270 < th dose independent rect. 6 11
407 191.01 temperature 10.0 270 > th dose independent rect. 17 13
452 191.91 temperature 30.0 720 < th dose independent rect. 10 3
465 192.14 humidity 60.0 270 > th dose independent rect. 1 20
470 192.32 precipitation 0.1 270 < th dose independent rect. 12 13
471 192.32 precipitation 0.1 270 < th dose dependent rect. 12 13
472 192.37 radiation 1.0 90 < th dose independent rect. 3 22
496 192.92 wind 9.0 270 < th dose independent rect. 17 13
517 193.43 radiation 10.0 90 < th dose dependent rect. 3 23
528 193.63 atmosphere 1005.0 270 > th dose independent rect. 16 4
535 193.75 temperature 15.0 30 > th dose dependent sin 17 NA
582 194.39 temperature 15.0 270 > th dose dependent rect. 22 3
635 195.03 temperature 15.0 90 > th dose dependent rect. 22 5
636 195.04 temperature 10.0 90 > th dose dependent rect. 21 22
652 195.18 radiation 1.0 270 < th dose dependent rect. 1 21
657 195.21 temperature 30.0 90 < th dose dependent rect. 3 20
675 195.48 humidity 60.0 270 > th dose independent rect. 2 18
695 195.75 humidity 50.0 90 > th dose dependent rect. 3 20
710 195.93 precipitation 0.1 720 < th dose independent rect. 5 13
711 195.93 atmosphere 1000.0 270 > th dose dependent rect. 17 3
713 195.93 precipitation 0.1 720 < th dose dependent rect. 5 13
722 196.03 atmosphere 995.0 720 > th dose independent rect. 8 7
730 196.11 radiation 1.0 720 > th dose independent rect. 13 5
757 196.33 temperature 15.0 270 > th dose dependent rect. 23 1
770 196.48 humidity 60.0 10 > th dose dependent rect. 17 5
787 196.80 precipitation 0.1 720 < th dose independent rect. 13 5
788 196.80 precipitation 0.1 720 < th dose dependent rect. 13 5
821 197.14 humidity 70.0 10 > th dose independent rect. 18 13
825 197.22 temperature 25.0 270 < th dose independent rect. 10 20
844 197.29 radiation 1.0 720 > th dose independent rect. 13 19
855 197.37 radiation 20.0 270 < th dose independent rect. 15 6
879 197.56 atmosphere 1005.0 270 > th dose independent rect. 17 1
916 197.89 wind 9.0 270 < th dose independent rect. 12 13
942 198.08 temperature 30.0 30 < th dose dependent rect. 12 19
943 198.10 temperature 30.0 720 < th dose independent rect. 1 12