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Os03g0339700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF827, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.98 (0.0332) R2 : 0.88
β1 : -1.53 (0.122) R2dD : 0.0431 R2D : 0.0172
β2 : 4.81 (0.0871) R2dC : 0.854 R2C : 0.651
β3 : 3.49 (0.13) R2dE : 0.212 R2E : -0.0409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.464 (0.0715) R2dN8 : 0.0152 R2N8 : -0.00594
σ : 0.618
deviance : 176.34
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_____
C
peak time of C : 16.1
E
wheather : temperature
threshold : 9.911
memory length : 266
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.3
open length of G : 18

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.04 0.613 6.99 -1.62 4.8 3.48 1.31 -1.04 -0.49 16 9.948 266 20.2 18.1
171.14 0.609 6.99 -1.55 4.76 3.46 1.34 -- -0.479 16 9.999 259 20.3 18.1
174.89 0.616 6.99 -1.61 4.83 3.51 -- -1.17 -0.485 16.1 9.757 266 20.2 18.1
176.34 0.618 6.98 -1.53 4.81 3.49 -- -- -0.464 16.1 9.911 266 20.3 18
210.4 0.676 6.95 -2.02 -- 6.23 -- -1.06 -0.498 -- -27.25 931 21.2 17.6
317.06 0.835 6.87 -1.14 4.36 -- 1.37 -- -0.173 14.7 -- -- -- --
323.56 0.842 6.86 -1.11 4.36 -- -- -- -0.165 14.7 -- -- -- --
198.7 0.657 6.92 -1.71 -- 6.07 -- -- -0.459 -- -31.01 909 21.4 17.8
235.82 0.715 6.95 -- 4.72 3.2 -- -- -0.304 16 9.637 246 20.4 18.1
1429.72 1.77 6.89 -1.29 -- -- -- -- -0.276 -- -- -- -- --
355.96 0.883 6.84 -- 4.38 -- -- -- -0.0412 14.7 -- -- -- --
265.54 0.759 6.85 -- -- 5.47 -- -- -0.164 -- -64.61 925 21.5 17.6
1473.94 1.79 6.85 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.14 temperature 10.0 270 > th dose dependent rect. 20 18
9 180.88 temperature 10.0 270 > th dose dependent rect. 6 9
20 188.55 temperature 30.0 90 < th dose dependent rect. 3 18
27 193.20 temperature 30.0 270 < th dose dependent rect. 1 19
32 194.53 temperature 10.0 270 > th dose dependent rect. 8 17
41 195.81 temperature 10.0 270 > th dose dependent rect. 7 19
44 196.27 temperature 20.0 270 > th dose independent rect. 20 18
107 205.28 temperature 30.0 270 < th dose dependent rect. 2 7
109 205.45 temperature 15.0 270 > th dose independent rect. 20 6
128 206.98 temperature 10.0 270 > th dose dependent rect. 20 6
137 207.70 temperature 15.0 270 > th dose independent rect. 7 8
163 209.66 wind 7.0 270 < th dose independent rect. 7 8
180 210.73 humidity 90.0 270 < th dose independent rect. 7 8
181 210.74 radiation 1.0 270 > th dose independent rect. 7 9
192 211.42 radiation 40.0 270 < th dose dependent rect. 15 16
196 211.90 radiation 1.0 270 < th dose independent rect. 3 16
205 212.36 precipitation 0.1 270 < th dose independent rect. 2 18
206 212.36 precipitation 0.1 270 < th dose dependent rect. 2 18
225 213.37 temperature 15.0 270 > th dose independent rect. 9 16
226 213.52 radiation 30.0 270 < th dose independent rect. 15 16
231 213.89 radiation 1.0 270 < th dose dependent rect. 3 16
233 213.91 humidity 50.0 270 > th dose dependent rect. 20 6
252 214.86 temperature 15.0 270 > th dose independent rect. 8 18
261 215.28 temperature 30.0 270 < th dose independent rect. 20 6
262 215.28 humidity 50.0 270 > th dose independent rect. 20 6
265 215.28 atmosphere 995.0 270 > th dose independent rect. 20 6
266 215.28 radiation 1.0 270 < th dose independent rect. 20 6
271 215.28 temperature 10.0 270 > th dose independent rect. 2 18
272 215.28 atmosphere 1015.0 270 < th dose independent rect. 2 18
273 215.28 radiation 1.0 270 < th dose dependent rect. 20 6
286 215.72 wind 9.0 270 < th dose independent rect. 20 6
314 216.07 precipitation 0.1 270 < th dose independent rect. 15 16
315 216.07 precipitation 0.1 270 < th dose dependent rect. 15 16
316 216.13 precipitation 0.1 270 < th dose independent rect. 20 6
317 216.13 precipitation 0.1 270 < th dose dependent rect. 20 6
368 217.38 radiation 40.0 270 < th dose dependent rect. 2 17
397 218.41 radiation 40.0 270 < th dose independent rect. 13 8
408 218.74 precipitation 0.1 270 < th dose independent rect. 7 8
409 218.74 precipitation 0.1 270 < th dose dependent rect. 7 8
451 219.28 atmosphere 995.0 270 > th dose independent rect. 2 18
460 219.60 wind 7.0 270 < th dose independent rect. 21 17
464 219.81 atmosphere 1015.0 270 < th dose independent rect. 7 8
465 219.81 temperature 10.0 270 > th dose independent rect. 15 16
466 219.81 humidity 50.0 270 > th dose independent rect. 15 16
479 220.20 wind 9.0 270 < th dose independent rect. 2 18
483 220.36 temperature 30.0 90 < th dose independent rect. 4 17
493 220.54 radiation 40.0 270 < th dose independent rect. 2 18
505 220.77 wind 9.0 270 < th dose independent rect. 15 16
545 221.71 atmosphere 995.0 270 > th dose independent rect. 7 8
586 222.56 humidity 50.0 270 > th dose independent rect. 7 8
632 223.50 humidity 50.0 270 > th dose independent rect. 21 17
653 223.65 temperature 15.0 270 > th dose independent rect. 6 21
657 223.71 wind 1.0 270 > th dose independent rect. 7 8
667 223.91 radiation 1.0 270 < th dose independent sin 1 NA
688 224.36 temperature 10.0 270 > th dose independent rect. 14 7
690 224.36 atmosphere 995.0 270 > th dose independent rect. 21 17
695 224.50 radiation 1.0 270 > th dose independent sin 1 NA
711 224.71 humidity 50.0 270 > th dose independent rect. 2 18
716 224.84 precipitation 0.1 270 < th dose independent rect. 14 7
717 224.84 precipitation 0.1 270 < th dose dependent rect. 14 7
726 225.10 humidity 50.0 270 > th dose independent rect. 14 6
731 225.19 wind 1.0 270 > th dose independent rect. 14 7
739 225.32 atmosphere 995.0 270 > th dose independent rect. 15 16
740 225.35 atmosphere 1015.0 270 < th dose independent rect. 20 6
756 225.71 radiation 1.0 270 < th dose dependent sin 1 NA
772 226.02 wind 9.0 270 < th dose independent rect. 14 7
773 226.06 radiation 40.0 270 < th dose dependent rect. 14 5
786 226.30 radiation 20.0 4320 < th dose independent rect. 22 8
787 226.30 radiation 40.0 270 < th dose dependent rect. 2 7
813 226.77 atmosphere 1015.0 270 < th dose independent rect. 14 7
814 226.81 temperature 25.0 270 < th dose independent rect. 2 17
821 226.95 humidity 50.0 90 > th dose dependent rect. 4 17
829 227.12 temperature 10.0 43200 > th dose independent rect. 10 8
846 227.46 precipitation 0.1 270 < th dose independent rect. 1 8
847 227.46 precipitation 0.1 270 < th dose dependent rect. 1 8
885 228.11 radiation 20.0 270 < th dose independent rect. 15 4
887 228.14 wind 7.0 270 < th dose independent rect. 8 18
899 228.34 precipitation 0.1 270 < th dose independent rect. 2 6
900 228.34 precipitation 0.1 270 < th dose dependent rect. 2 6
934 228.78 temperature 30.0 270 < th dose dependent rect. 3 3
949 228.92 precipitation 0.1 270 < th dose independent rect. 21 17
951 228.92 precipitation 0.1 270 < th dose dependent rect. 21 17
956 228.95 wind 9.0 270 < th dose independent rect. 9 16