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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0339400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0165) R2 : 0.000736
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0201 (0.0347) R2dN8 : 0.000951 R2N8 : 0.000736
σ : 0.311
deviance : 44.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.8 0.304 3.16 0.0499 0.143 -0.267 -0.00495 -0.117 -0.0515 8.3 70.01 4289 -- --
41.82 0.301 3.16 0.0458 0.144 -0.278 -0.00547 -- -0.0546 8.28 70.18 4289 -- --
41.8 0.301 3.16 0.0499 0.143 -0.267 -- -0.118 -0.0515 8.31 70.01 4289 -- --
41.82 0.301 3.16 0.0439 0.144 -0.271 -- -- -0.0557 8.41 70.02 4249 -- --
42.92 0.305 3.16 0.0537 -- -0.274 -- -0.13 -0.0506 -- 71 4368 -- --
43.06 0.308 3.15 0.0462 0.145 -- -0.0358 -- -0.0168 8.03 -- -- -- --
43.07 0.307 3.15 0.0454 0.145 -- -- -- -0.0167 8.11 -- -- -- --
42.94 0.305 3.16 0.0433 -- -0.285 -- -- -0.0533 -- 70.54 4347 -- --
41.87 0.301 3.16 -- 0.146 -0.274 -- -- -0.0593 8.42 70.37 4236 -- --
44.22 0.311 3.15 0.0466 -- -- -- -- -0.015 -- -- -- -- --
43.12 0.307 3.15 -- 0.145 -- -- -- -0.0218 8.09 -- -- -- --
42.99 0.305 3.16 -- -- -0.286 -- -- -0.058 -- 71 4347 -- --
44.27 0.311 3.16 -- -- -- -- -- -0.0201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.96 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 39.98 atmosphere 1005.0 10 > th dose dependent rect. 2 2
4 40.02 humidity 70.0 4320 > th dose independent rect. 21 1
11 40.18 humidity 50.0 10 > th dose independent rect. 3 23
12 40.20 humidity 70.0 4320 > th dose independent rect. 22 4
18 40.48 temperature 25.0 90 > th dose dependent rect. 1 3
19 40.55 temperature 25.0 90 > th dose independent rect. 1 3
21 40.58 atmosphere 995.0 720 > th dose independent rect. 23 16
22 40.58 radiation 1.0 14400 < th dose dependent rect. 3 1
24 40.61 temperature 25.0 90 > th dose independent rect. 1 1
26 40.61 humidity 80.0 14400 < th dose dependent rect. 2 7
28 40.63 wind 7.0 10 < th dose independent rect. 3 23
31 40.66 wind 9.0 30 < th dose dependent rect. 3 23
32 40.67 atmosphere 1010.0 10 < th dose dependent rect. 2 1
36 40.70 atmosphere 1005.0 90 > th dose independent rect. 2 1
39 40.71 humidity 90.0 90 < th dose independent rect. 2 3
40 40.71 humidity 70.0 4320 > th dose independent rect. 20 6
42 40.72 humidity 70.0 4320 > th dose independent rect. 20 10
44 40.74 humidity 90.0 30 > th dose dependent rect. 2 1
51 40.76 humidity 80.0 14400 < th dose dependent rect. 21 13
57 40.80 wind 1.0 30 > th dose independent rect. 2 1
58 40.80 humidity 70.0 4320 > th dose independent rect. 20 8
62 40.81 wind 3.0 90 < th dose independent rect. 2 1
63 40.81 humidity 90.0 10 > th dose independent rect. 2 1
70 40.82 temperature 30.0 30 < th dose dependent rect. 2 1
75 40.82 humidity 60.0 4320 > th dose dependent rect. 5 4
76 40.83 wind 5.0 10 < th dose independent rect. 2 1
81 40.83 temperature 10.0 30 > th dose independent rect. 2 1
83 40.83 temperature 30.0 30 < th dose independent rect. 2 1
84 40.83 humidity 50.0 30 > th dose independent rect. 2 1
87 40.83 atmosphere 995.0 30 > th dose independent rect. 2 1
88 40.83 atmosphere 1010.0 30 < th dose independent rect. 2 1
90 40.83 radiation 1.0 30 < th dose independent rect. 2 1
95 40.83 precipitation 0.1 30 < th dose independent rect. 2 1
97 40.83 temperature 10.0 30 > th dose independent rect. 3 23
99 40.83 humidity 50.0 30 > th dose dependent rect. 2 1
102 40.83 radiation 1.0 30 < th dose dependent rect. 2 1
111 40.83 precipitation 0.1 30 < th dose dependent rect. 2 1
115 40.84 wind 9.0 1440 < th dose independent rect. 3 1
116 40.84 temperature 10.0 1440 > th dose independent rect. 3 1
120 40.84 temperature 30.0 1440 < th dose independent rect. 3 1
125 40.84 humidity 50.0 1440 > th dose independent rect. 3 1
135 40.84 atmosphere 995.0 1440 > th dose independent rect. 3 1
136 40.84 radiation 1.0 1440 < th dose independent rect. 3 1
157 40.84 temperature 10.0 1440 > th dose independent rect. 4 23
160 40.84 precipitation 0.1 10 < th dose independent rect. 3 23
161 40.84 wind 7.0 30 < th dose dependent rect. 2 1
163 40.84 temperature 10.0 30 > th dose dependent rect. 2 1
178 40.84 precipitation 0.1 10 < th dose dependent rect. 3 23
219 40.86 humidity 90.0 4320 < th dose dependent rect. 6 2
280 40.98 humidity 50.0 4320 > th dose independent rect. 16 1
289 41.01 atmosphere 1000.0 720 > th dose independent rect. 3 8
297 41.03 humidity 70.0 4320 > th dose independent rect. 20 13
309 41.06 precipitation 0.1 14400 > th dose dependent rect. 5 1
316 41.07 precipitation 0.1 720 < th dose independent rect. 15 8
320 41.07 precipitation 0.1 720 < th dose dependent rect. 15 8
321 41.08 precipitation 0.1 14400 > th dose independent rect. 5 1
345 41.10 wind 9.0 720 < th dose independent rect. 3 8
356 41.11 humidity 70.0 4320 < th dose independent rect. 20 1
361 41.11 humidity 80.0 4320 > th dose independent rect. 5 6
368 41.11 humidity 70.0 4320 < th dose dependent rect. 20 1
378 41.12 precipitation 0.1 14400 < th dose independent rect. 5 1
381 41.12 precipitation 0.1 14400 < th dose dependent rect. 5 1
385 41.13 radiation 1.0 720 < th dose independent rect. 8 1
389 41.13 radiation 1.0 720 < th dose dependent rect. 8 1
392 41.14 humidity 80.0 4320 < th dose independent rect. 5 6
394 41.14 humidity 70.0 14400 < th dose independent rect. 20 14
416 41.16 precipitation 0.1 720 < th dose independent rect. 11 16
420 41.16 precipitation 0.1 720 < th dose dependent rect. 11 16
423 41.17 humidity 70.0 14400 < th dose independent rect. 7 3
438 41.18 temperature 10.0 720 > th dose independent rect. 15 8
439 41.18 temperature 10.0 720 > th dose independent rect. 23 16
448 41.21 humidity 70.0 14400 > th dose independent rect. 8 1
450 41.21 atmosphere 995.0 720 > th dose independent rect. 7 8
451 41.21 atmosphere 1000.0 10 > th dose independent rect. 14 12
452 41.21 wind 9.0 4320 > th dose dependent rect. 14 1
456 41.22 wind 5.0 14400 < th dose independent rect. 11 1
460 41.22 atmosphere 1000.0 10 > th dose independent rect. 21 23
468 41.24 atmosphere 1005.0 30 > th dose independent rect. 2 3
472 41.24 temperature 10.0 720 > th dose independent rect. 3 8
474 41.24 temperature 10.0 720 > th dose independent rect. 11 16
476 41.24 wind 1.0 14400 < th dose dependent rect. 6 1
479 41.25 wind 3.0 14400 > th dose independent rect. 10 1
480 41.25 wind 5.0 14400 < th dose independent rect. 10 5
481 41.25 atmosphere 1010.0 270 > th dose dependent rect. 12 1
492 41.26 wind 3.0 14400 > th dose dependent rect. 11 1
505 41.27 temperature 25.0 720 > th dose dependent rect. 4 4
512 41.28 temperature 30.0 720 < th dose independent rect. 15 22
513 41.28 wind 7.0 14400 < th dose dependent rect. 11 1
514 41.28 temperature 25.0 720 > th dose dependent rect. 6 2
518 41.28 wind 3.0 30 > th dose dependent rect. 7 7
522 41.29 wind 9.0 90 > th dose independent rect. 10 1
526 41.29 atmosphere 995.0 720 > th dose independent rect. 3 23
527 41.29 wind 9.0 90 > th dose dependent rect. 10 1
540 41.30 wind 5.0 14400 > th dose independent rect. 10 5
546 41.30 wind 7.0 30 < th dose independent rect. 21 23
548 41.30 atmosphere 1010.0 10 > th dose dependent rect. 12 1
558 41.30 wind 5.0 90 > th dose dependent rect. 9 4
589 41.31 precipitation 0.1 14400 > th dose independent rect. 1 7
591 41.31 wind 9.0 720 < th dose dependent rect. 2 1
601 41.32 atmosphere 995.0 720 > th dose independent rect. 15 23
610 41.33 humidity 50.0 720 > th dose independent rect. 3 8
613 41.33 temperature 30.0 720 < th dose independent rect. 9 12
614 41.33 humidity 90.0 90 < th dose dependent rect. 2 1
639 41.34 wind 3.0 720 < th dose independent rect. 1 4
641 41.34 precipitation 0.1 14400 < th dose independent rect. 1 6
651 41.34 precipitation 0.1 14400 < th dose dependent rect. 1 6
657 41.35 wind 5.0 30 > th dose independent rect. 8 6
659 41.35 wind 5.0 14400 > th dose independent rect. 10 7
675 41.35 wind 3.0 14400 > th dose dependent rect. 10 5
702 41.36 humidity 60.0 10 > th dose independent rect. 14 12
726 41.36 precipitation 0.1 14400 > th dose dependent rect. 1 7
753 41.37 wind 5.0 90 > th dose dependent rect. 10 1
769 41.38 atmosphere 1000.0 720 > th dose independent rect. 3 6
816 41.40 atmosphere 1010.0 10 > th dose dependent sin 0 NA
818 41.40 humidity 90.0 10 < th dose dependent rect. 3 2
829 41.41 atmosphere 1000.0 10 > th dose independent rect. 2 12
830 41.41 radiation 40.0 30 < th dose independent rect. 14 12
837 41.41 humidity 90.0 90 < th dose dependent rect. 2 3