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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0339300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0264) R2 : 0.018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0555) R2dN8 : 0.0233 R2N8 : 0.018
σ : 0.496
deviance : 113.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.04 0.482 3.18 -0.994 0.228 0.805 -0.0189 -4.48 0.196 15.2 29.77 4706 -- --
106.42 0.48 3.13 -0.279 0.214 0.298 0.125 -- 0.0428 14.9 27.08 7941 -- --
105.04 0.477 3.18 -0.982 0.227 0.794 -- -4.38 0.193 15.2 29.7 4706 -- --
106.08 0.48 3.13 -0.25 0.252 0.269 -- -- 0.0566 15.5 28.5 8504 -- --
107.97 0.484 3.18 -0.996 -- 0.781 -- -4.36 0.182 -- 29.6 4733 -- --
109.3 0.49 3.11 -0.168 0.231 -- -0.0337 -- 0.147 15.6 -- -- -- --
109.3 0.49 3.11 -0.169 0.23 -- -- -- 0.147 15.6 -- -- -- --
109.17 0.487 3.1 -0.26 -- 0.287 -- -- 0.163 -- 28 4846 -- --
107.66 0.483 3.12 -- 0.252 0.245 -- -- 0.0951 15.3 29.7 9787 -- --
112.26 0.495 3.11 -0.178 -- -- -- -- 0.141 -- -- -- -- --
110.05 0.491 3.1 -- 0.234 -- -- -- 0.166 15.6 -- -- -- --
110.83 0.49 3.1 -- -- 0.235 -- -- 0.194 -- 28.5 4834 -- --
113.1 0.496 3.1 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.08 wind 9 10 > th dose independent rect. 18 1
4 97.08 wind 9 10 > th dose dependent rect. 18 1
7 97.52 wind 9 90 > th dose dependent rect. 16 2
9 98.10 wind 9 90 > th dose independent rect. 16 2
11 98.32 wind 9 90 > th dose dependent rect. 16 18
15 98.35 wind 9 90 > th dose dependent rect. 16 7
29 98.67 wind 9 90 > th dose independent rect. 16 18
76 99.54 wind 9 90 < th dose independent sin 13 NA
78 99.99 wind 9 90 > th dose independent sin 12 NA
80 100.36 wind 9 90 > th dose independent rect. 14 4
82 100.44 wind 9 90 > th dose independent rect. 12 6
84 100.54 wind 9 90 > th dose dependent sin 13 NA
88 100.63 wind 9 90 > th dose independent rect. 14 20
120 100.70 wind 9 90 > th dose independent rect. 12 22
123 100.71 wind 9 90 > th dose independent rect. 12 11
156 101.02 wind 9 90 > th dose dependent rect. 14 4
158 101.11 wind 9 90 > th dose dependent rect. 12 6
166 101.45 wind 9 90 > th dose dependent rect. 14 20
172 101.48 wind 9 90 > th dose dependent rect. 14 9
198 101.53 wind 9 90 > th dose dependent rect. 12 22
202 101.57 wind 9 90 > th dose dependent rect. 12 11
232 102.25 humidity 50 720 > th dose dependent rect. 3 10
235 102.44 radiation 1 720 < th dose independent rect. 20 10
242 102.63 humidity 70 90 < th dose independent rect. 16 3
243 102.64 wind 5 43200 > th dose independent rect. 18 9
246 102.66 radiation 1 720 < th dose independent rect. 5 1
247 102.66 wind 5 43200 < th dose independent rect. 18 9
251 102.70 wind 5 43200 > th dose independent rect. 18 6
269 102.76 radiation 1 720 < th dose dependent rect. 20 10
277 102.84 radiation 1 720 < th dose independent rect. 4 3
279 102.85 wind 1 90 < th dose independent rect. 9 2
281 102.87 humidity 70 90 < th dose independent rect. 16 1
303 102.94 wind 5 43200 > th dose dependent rect. 18 5
329 103.02 humidity 80 90 < th dose dependent rect. 16 19
330 103.03 humidity 50 1440 > th dose dependent rect. 6 4
344 103.05 wind 3 43200 > th dose dependent rect. 18 10
347 103.06 humidity 80 720 > th dose independent rect. 3 9
371 103.11 radiation 1 720 > th dose independent rect. 5 7
392 103.14 humidity 90 10 < th dose dependent rect. 17 19
393 103.15 temperature 20 720 < th dose independent rect. 9 1
394 103.15 humidity 90 720 < th dose dependent rect. 7 3
398 103.15 wind 9 43200 > th dose dependent rect. 15 15
416 103.20 wind 5 43200 > th dose independent sin 12 NA
433 103.21 humidity 90 720 < th dose dependent rect. 6 5
438 103.22 humidity 90 720 < th dose dependent rect. 3 8
444 103.24 wind 5 43200 < th dose independent sin 12 NA
446 103.24 wind 9 43200 > th dose independent rect. 15 14
467 103.28 wind 9 43200 > th dose dependent rect. 15 9
479 103.31 wind 5 43200 > th dose independent rect. 19 1
496 103.34 humidity 80 720 < th dose independent rect. 6 6
540 103.39 wind 5 43200 > th dose dependent sin 12 NA
541 103.39 humidity 60 1440 > th dose dependent sin 4 NA
558 103.41 wind 9 43200 < th dose independent rect. 15 14
589 103.45 wind 9 43200 < th dose independent rect. 15 16
594 103.46 radiation 1 720 < th dose independent rect. 4 9
598 103.46 humidity 80 720 < th dose independent rect. 23 13
603 103.46 humidity 90 1440 < th dose dependent rect. 2 12
611 103.47 radiation 1 720 < th dose independent rect. 20 17
613 103.47 radiation 1 720 < th dose dependent rect. 4 3
662 103.52 wind 9 43200 > th dose independent rect. 15 9
743 103.60 radiation 1 270 < th dose independent rect. 19 20
756 103.61 radiation 1 270 > th dose independent rect. 14 22
764 103.62 humidity 60 1440 > th dose independent rect. 12 1
822 103.67 wind 9 90 < th dose independent sin 11 NA
823 103.67 wind 9 43200 < th dose independent rect. 15 9
871 103.72 humidity 80 1440 > th dose independent rect. 6 6
875 103.72 humidity 70 270 < th dose independent rect. 15 19
882 103.72 temperature 10 10 > th dose dependent rect. 17 19
904 103.74 humidity 80 720 < th dose independent rect. 9 1
924 103.76 wind 1 90 < th dose independent rect. 9 4
944 103.77 humidity 90 1440 < th dose dependent sin 5 NA