Os03g0338600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA pseudouridine synthase family protein.
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Os03g0338600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA pseudouridine synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.01 | 0.564 | 8.86 | -0.613 | 1.42 | 1.08 | 1.28 | 3.94 | -0.905 | 20 | 29.81 | 248 | -- | -- |
| 160.87 | 0.591 | 8.85 | -0.669 | 1.38 | 0.717 | 0.95 | -- | -0.932 | 19.7 | 19.98 | 271 | -- | -- |
| 148.64 | 0.568 | 8.85 | -0.634 | 1.4 | 1.07 | -- | 3.84 | -0.892 | 20 | 30.33 | 269 | -- | -- |
| 161.39 | 0.592 | 8.87 | -0.688 | 1.41 | 1.01 | -- | -- | -0.935 | 20.7 | 4 | 270 | -- | -- |
| 180.74 | 0.626 | 8.83 | -0.627 | -- | 1.6 | -- | 2.84 | -0.986 | -- | -0.4431 | 841 | -- | -- |
| 169.94 | 0.611 | 8.84 | -0.634 | 1.51 | -- | 1.38 | -- | -0.847 | 19.1 | -- | -- | -- | -- |
| 174.87 | 0.619 | 8.84 | -0.662 | 1.51 | -- | -- | -- | -0.845 | 19.2 | -- | -- | -- | -- |
| 189.22 | 0.641 | 8.84 | -0.792 | -- | 1.7 | -- | -- | -1.05 | -- | -1.793 | 806 | -- | -- |
| 174.19 | 0.615 | 8.84 | -- | 1.43 | 0.911 | -- | -- | -0.841 | 20.5 | 5.282 | 259 | -- | -- |
| 295.39 | 0.803 | 8.8 | -0.69 | -- | -- | -- | -- | -0.871 | -- | -- | -- | -- | -- |
| 186.43 | 0.639 | 8.82 | -- | 1.52 | -- | -- | -- | -0.771 | 19.1 | -- | -- | -- | -- |
| 205.7 | 0.668 | 8.82 | -- | -- | 1.67 | -- | -- | -0.956 | -- | -30.08 | 803 | -- | -- |
| 307.97 | 0.819 | 8.79 | -- | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 7 | 137.41 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 8 | 137.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 12 | 137.74 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 34 | 138.61 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 42 | 138.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 44 | 139.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 135 | 140.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 183 | 141.75 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 230 | 142.56 | radiation | 30 | 270 | > th | dose dependent | sin | 6 | NA |
| 317 | 143.52 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 358 | 144.23 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 13 |
| 384 | 144.44 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 401 | 144.45 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 554 | 144.58 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 3 |
| 572 | 144.70 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 663 | 144.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 676 | 145.03 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 722 | 145.22 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 21 |
| 732 | 145.27 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 744 | 145.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |