Os03g0337900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : L-Aspartase-like domain containing protein.
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Os03g0337900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : L-Aspartase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.73 | 0.285 | 10.7 | 0.384 | 0.537 | -0.764 | -0.347 | 1.95 | 0.297 | 4.87 | 25.88 | 1513 | -- | -- |
| 45.36 | 0.316 | 10.8 | -0.334 | 0.359 | -0.313 | -0.361 | -- | 0.00814 | 6.58 | 25.88 | 1513 | -- | -- |
| 37.03 | 0.283 | 10.7 | 0.382 | 0.53 | -0.765 | -- | 1.94 | 0.298 | 4.89 | 25.85 | 1522 | -- | -- |
| 39.98 | 0.294 | 10.8 | -0.233 | 0.59 | -0.526 | -- | -- | 0.142 | 4.62 | 24 | 1247 | -- | -- |
| 48 | 0.323 | 10.7 | 0.531 | -- | -0.782 | -- | 2.29 | 0.277 | -- | 26.8 | 1788 | -- | -- |
| 51.59 | 0.337 | 10.8 | -0.419 | 0.546 | -- | -0.362 | -- | -0.0909 | 5.05 | -- | -- | -- | -- |
| 51.93 | 0.337 | 10.8 | -0.419 | 0.543 | -- | -- | -- | -0.0892 | 5.06 | -- | -- | -- | -- |
| 48.58 | 0.325 | 10.8 | -0.278 | -- | -0.473 | -- | -- | 0.0842 | -- | 25.79 | 141 | -- | -- |
| 40.91 | 0.298 | 10.8 | -- | 0.587 | -0.541 | -- | -- | 0.159 | 4.88 | 24 | 1365 | -- | -- |
| 67.43 | 0.384 | 10.8 | -0.399 | -- | -- | -- | -- | -0.0753 | -- | -- | -- | -- | -- |
| 56.54 | 0.352 | 10.8 | -- | 0.536 | -- | -- | -- | -0.0426 | 5.08 | -- | -- | -- | -- |
| 50.09 | 0.33 | 10.8 | -- | -- | -0.56 | -- | -- | 0.13 | -- | 25.9 | 370 | -- | -- |
| 71.63 | 0.395 | 10.8 | -- | -- | -- | -- | -- | -0.0311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 22 | 36.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 37 | 36.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 39 | 36.71 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 40 | 36.71 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 46 | 36.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 51 | 36.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 96 | 36.96 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 103 | 36.98 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 164 | 37.15 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 272 | 37.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 490 | 37.73 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 679 | 38.11 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 705 | 38.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 18 |
| 760 | 38.26 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 773 | 38.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 798 | 38.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 801 | 38.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 847 | 38.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 850 | 38.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 867 | 38.43 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 891 | 38.45 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 922 | 38.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 981 | 38.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 982 | 38.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 23 |