Os03g0337800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L19 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0337800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 60S ribosomal protein L19 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.33 | 0.254 | 14.3 | 0.968 | 0.458 | 0.338 | 0.646 | -1.21 | 0.348 | 20.3 | 10 | 1452 | -- | -- |
| 31.97 | 0.263 | 14.3 | 0.92 | 0.474 | 0.31 | 0.512 | -- | 0.355 | 20.5 | 19.99 | 1472 | -- | -- |
| 30.33 | 0.256 | 14.3 | 0.958 | 0.473 | 0.327 | -- | -1.17 | 0.356 | 20.7 | 10.64 | 1384 | -- | -- |
| 32.9 | 0.267 | 14.3 | 0.895 | 0.484 | 0.257 | -- | -- | 0.332 | 20.6 | 20 | 1438 | -- | -- |
| 41.64 | 0.301 | 14.3 | 0.982 | -- | 0.414 | -- | -1.28 | 0.378 | -- | 10.76 | 1502 | -- | -- |
| 34.27 | 0.274 | 14.3 | 0.846 | 0.476 | -- | 0.552 | -- | 0.257 | 20.4 | -- | -- | -- | -- |
| 35.24 | 0.278 | 14.3 | 0.829 | 0.475 | -- | -- | -- | 0.257 | 20.5 | -- | -- | -- | -- |
| 41.94 | 0.303 | 14.3 | 0.816 | -- | 0.245 | -- | -- | 0.255 | -- | 8.631 | 1548 | -- | -- |
| 44.38 | 0.31 | 14.4 | -- | 0.481 | 0.595 | -- | -- | 0.171 | 20.7 | 61.42 | 46759 | -- | -- |
| 47.85 | 0.323 | 14.3 | 0.827 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 53.34 | 0.342 | 14.4 | -- | 0.472 | -- | -- | -- | 0.165 | 20.6 | -- | -- | -- | -- |
| 57.15 | 0.352 | 14.3 | -- | -- | 0.599 | -- | -- | 0.164 | -- | 91.59 | 47520 | -- | -- |
| 65.88 | 0.379 | 14.3 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 27.87 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 4 | 27.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 7 | 28.09 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 9 | 28.11 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 14 | 28.12 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 26 | 28.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 44 | 28.25 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 126 | 28.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 130 | 28.60 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 131 | 28.60 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 135 | 28.61 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 143 | 28.63 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 277 | 28.92 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 285 | 28.95 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 288 | 28.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 304 | 28.95 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 329 | 28.99 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 331 | 29.00 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 350 | 29.03 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 358 | 29.04 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 10 |
| 364 | 29.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 367 | 29.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 381 | 29.11 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 387 | 29.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 388 | 29.11 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 421 | 29.13 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 433 | 29.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 450 | 29.15 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 458 | 29.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 462 | 29.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 466 | 29.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 467 | 29.17 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 484 | 29.18 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 486 | 29.18 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 497 | 29.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 511 | 29.20 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 11 | NA |
| 514 | 29.20 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 526 | 29.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 586 | 29.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 610 | 29.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 670 | 29.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 711 | 29.36 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 809 | 29.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 892 | 29.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 894 | 29.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 911 | 29.42 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |