Os03g0336400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-expansin OsEXPA4.
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Os03g0336400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-expansin OsEXPA4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 393.73 | 0.932 | 4.06 | -1.33 | 0.541 | -1.97 | 1.86 | 7.32 | -0.467 | 19 | 33.9 | 937 | -- | -- |
| 397.31 | 0.928 | 3.95 | -0.459 | 0.351 | -1.39 | 1.41 | -- | -0.448 | 19.6 | 32.31 | 857 | -- | -- |
| 402.49 | 0.934 | 4.06 | -1.36 | 0.511 | -2.03 | -- | 7.49 | -0.466 | 19.2 | 33.77 | 925 | -- | -- |
| 402.43 | 0.934 | 3.95 | -0.452 | 0.341 | -1.46 | -- | -- | -0.458 | 19.8 | 32.4 | 824 | -- | -- |
| 408.75 | 0.942 | 4.01 | -1.12 | -- | -2.34 | -- | 6.7 | -0.446 | -- | 32.9 | 804 | -- | -- |
| 448.68 | 0.993 | 3.99 | -0.164 | 0.64 | -- | 1.91 | -- | -0.63 | 19.8 | -- | -- | -- | -- |
| 458.96 | 1 | 3.99 | -0.215 | 0.638 | -- | -- | -- | -0.629 | 20.1 | -- | -- | -- | -- |
| 407.31 | 0.94 | 3.94 | -0.467 | -- | -1.61 | -- | -- | -0.474 | -- | 32.4 | 788 | -- | -- |
| 407.63 | 0.94 | 3.94 | -- | 0.339 | -1.41 | -- | -- | -0.417 | 19.8 | 32.4 | 810 | -- | -- |
| 481.24 | 1.03 | 3.98 | -0.221 | -- | -- | -- | -- | -0.637 | -- | -- | -- | -- | -- |
| 460.18 | 1 | 3.99 | -- | 0.639 | -- | -- | -- | -0.605 | 20 | -- | -- | -- | -- |
| 412.87 | 0.946 | 3.93 | -- | -- | -1.58 | -- | -- | -0.41 | -- | 32.32 | 785 | -- | -- |
| 482.53 | 1.03 | 3.97 | -- | -- | -- | -- | -- | -0.613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 390.80 | humidity | 60 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 3 | 391.41 | humidity | 60 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 12 | 393.07 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 13 | 393.10 | humidity | 80 | 10 | > th | dose independent | rect. | 17 | 9 |
| 35 | 395.80 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 40 | 396.34 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 41 | 396.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 43 | 396.42 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 20 |
| 94 | 396.87 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 97 | 396.91 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 99 | 396.97 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 102 | 396.99 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 113 | 397.20 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 116 | 397.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 122 | 397.36 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 17 |
| 201 | 398.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 202 | 398.44 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 19 |
| 206 | 398.49 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 21 |
| 280 | 399.01 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 392 | 399.19 | temperature | 25 | 30 | > th | dose dependent | sin | 12 | NA |
| 396 | 399.28 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 398 | 399.32 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 422 | 399.54 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 14 |
| 511 | 400.36 | humidity | 60 | 720 | < th | dose independent | sin | 13 | NA |
| 529 | 400.46 | humidity | 60 | 720 | > th | dose independent | sin | 13 | NA |
| 535 | 400.49 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 551 | 400.52 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 572 | 400.60 | humidity | 60 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 586 | 400.76 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 601 | 400.88 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 15 |
| 624 | 400.98 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 643 | 401.18 | humidity | 70 | 720 | < th | dose dependent | sin | 12 | NA |
| 648 | 401.28 | humidity | 60 | 720 | < th | dose independent | rect. | 16 | 3 |
| 738 | 401.59 | humidity | 80 | 270 | < th | dose dependent | sin | 14 | NA |
| 740 | 401.61 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 767 | 401.74 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 771 | 401.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 836 | 401.96 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 892 | 402.05 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 18 |
| 900 | 402.12 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 7 |
| 915 | 402.14 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 22 |
| 986 | 402.46 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |