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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0335200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY1 (WRKY transcription factor 17).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.93 (0.0666) R2 : 0.544
β1 : 3.84 (0.244) R2dD : 0.257 R2D : 0.133
β2 : 2.06 (0.18) R2dC : 0.163 R2C : 0.0139
β3 : -1.98 (0.29) R2dE : 0.0571 R2E : -0.0649
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.12 (0.142) R2dN8 : 0.297 R2N8 : 0.129
σ : 1.24
deviance : 713.37
__
_____
C
peak time of C : 21.7
E
wheather : humidity
threshold : 89
memory length : 1992
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.01
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
687.73 1.23 4.92 4.05 2.03 -2.1 2.17 1.55 2.16 22.1 89.2 2097 7.55 --
689.49 1.22 4.92 3.92 2.05 -2.01 2.49 -- 2.14 22 89 2077 8.01 --
703.25 1.24 4.91 4.1 2.11 -2.3 -- 2.91 2.19 22.1 89.95 2087 8.04 --
713.37 1.24 4.93 3.84 2.06 -1.98 -- -- 2.12 21.7 89 1992 8.01 --
803.17 1.32 4.84 4.25 -- -3 -- 4.8 2.45 -- 125.5 2557 6.41 --
759.63 1.29 4.92 4.07 1.55 -- 2.6 -- 2.11 21.6 -- -- -- --
784.58 1.31 4.92 3.97 1.55 -- -- -- 2.1 21.4 -- -- -- --
752.94 1.28 4.82 3.79 -- -2.8 -- -- 2.38 -- 166.3 2617 6.27 --
1066.24 1.52 4.82 -- 1.87 -2.84 -- -- 2.29 21.8 90.19 9146 7.94 --
925.15 1.42 4.88 3.98 -- -- -- -- 2.1 -- -- -- -- --
1200.23 1.62 5.02 -- 1.55 -- -- -- 1.66 21.6 -- -- -- --
1091.7 1.54 5.04 -- -- -3.05 -- -- 1.35 -- 68.3 47520 9.84 --
1343.02 1.71 4.98 -- -- -- -- -- 1.66 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 676.39 wind 7.0 43200 > th dose independent rect. 15 18
2 676.61 wind 7.0 43200 < th dose independent rect. 15 18
3 677.09 wind 7.0 43200 > th dose dependent rect. 15 18
11 679.52 wind 7.0 43200 < th dose independent rect. 18 3
13 680.31 wind 7.0 43200 > th dose independent rect. 15 14
14 680.37 wind 7.0 43200 < th dose independent rect. 15 14
16 680.82 temperature 25.0 43200 > th dose dependent rect. 3 1
17 680.91 wind 7.0 43200 > th dose independent rect. 18 3
31 682.19 temperature 30.0 43200 > th dose dependent rect. 8 2
48 682.25 temperature 25.0 43200 > th dose dependent rect. 1 4
50 682.29 wind 5.0 43200 > th dose dependent rect. 16 13
56 682.67 temperature 30.0 43200 < th dose independent rect. 8 2
57 682.70 temperature 30.0 43200 > th dose independent rect. 8 2
72 682.72 temperature 30.0 43200 < th dose independent rect. 21 13
78 682.76 wind 5.0 43200 > th dose dependent rect. 17 10
81 682.80 temperature 30.0 43200 < th dose independent rect. 2 8
122 683.93 wind 7.0 43200 < th dose independent rect. 18 6
131 684.28 humidity 70.0 43200 > th dose dependent rect. 18 1
150 684.85 wind 7.0 43200 < th dose independent rect. 18 9
173 685.14 wind 7.0 43200 > th dose independent rect. 17 10
187 685.36 wind 7.0 43200 > th dose independent rect. 18 6
193 685.53 wind 7.0 43200 < th dose independent sin 13 NA
201 685.74 temperature 25.0 43200 > th dose dependent rect. 6 1
204 685.79 temperature 25.0 43200 > th dose independent rect. 3 1
238 685.99 wind 7.0 43200 > th dose independent sin 13 NA
244 686.16 atmosphere 1005.0 43200 < th dose independent rect. 5 1
247 686.26 humidity 80.0 43200 > th dose independent rect. 8 3
280 686.90 wind 5.0 43200 > th dose dependent sin 13 NA
321 687.13 wind 5.0 43200 > th dose dependent rect. 18 3
347 687.69 temperature 25.0 43200 < th dose independent rect. 3 1
367 687.94 radiation 30.0 43200 > th dose independent rect. 15 1
401 688.32 temperature 30.0 43200 > th dose dependent sin 10 NA
415 688.44 temperature 30.0 43200 > th dose dependent rect. 17 2
467 689.06 temperature 30.0 43200 > th dose independent rect. 18 1
498 689.16 precipitation 0.1 43200 > th dose dependent rect. 19 2
542 689.64 precipitation 0.1 43200 < th dose independent rect. 17 1
543 689.64 precipitation 0.1 43200 < th dose dependent rect. 17 1
603 690.22 precipitation 0.1 43200 > th dose independent rect. 17 1
615 690.39 humidity 70.0 720 > th dose independent rect. 17 4
674 690.78 temperature 30.0 43200 < th dose independent rect. 18 7
677 690.85 temperature 30.0 43200 < th dose independent rect. 18 9
679 690.86 humidity 80.0 43200 < th dose independent rect. 18 2
698 690.93 temperature 30.0 43200 < th dose independent rect. 18 1
763 691.56 humidity 80.0 43200 > th dose independent rect. 9 1
772 691.70 precipitation 0.1 43200 > th dose dependent rect. 17 1
773 691.73 temperature 30.0 43200 > th dose independent sin 9 NA
775 691.81 humidity 70.0 720 > th dose independent rect. 17 12
779 691.84 humidity 70.0 43200 > th dose dependent rect. 17 3
784 691.93 temperature 30.0 43200 < th dose independent sin 9 NA
786 691.98 temperature 25.0 43200 > th dose independent rect. 5 1
807 692.11 atmosphere 1005.0 43200 > th dose independent rect. 5 1
895 693.03 temperature 25.0 43200 < th dose independent rect. 5 1
913 693.17 wind 5.0 43200 > th dose dependent rect. 19 1
984 693.87 temperature 30.0 43200 > th dose dependent no NA NA
985 693.87 temperature 30.0 43200 > th dose dependent rect. 8 11