Os03g0334500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0334500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.1 | 0.355 | 13.4 | -1.32 | 1.37 | 0.864 | 0.382 | -1.86 | -0.548 | 18.9 | 25.8 | 6110 | -- | -- |
| 57.33 | 0.353 | 13.4 | -0.886 | 1.42 | 0.84 | 0.413 | -- | -0.574 | 18.8 | 23.3 | 9862 | -- | -- |
| 56.48 | 0.35 | 13.4 | -1.33 | 1.37 | 0.922 | -- | -1.92 | -0.559 | 18.9 | 26.4 | 6133 | -- | -- |
| 57.64 | 0.354 | 13.4 | -0.927 | 1.43 | 0.867 | -- | -- | -0.59 | 18.7 | 23.3 | 9867 | -- | -- |
| 90.21 | 0.442 | 13.4 | -1.06 | -- | 1.33 | -- | -1.46 | -0.638 | -- | 26.3 | 488 | -- | -- |
| 79.01 | 0.417 | 13.3 | -0.404 | 1.4 | -- | 0.377 | -- | -0.206 | 18.9 | -- | -- | -- | -- |
| 79.36 | 0.417 | 13.3 | -0.41 | 1.4 | -- | -- | -- | -0.205 | 18.9 | -- | -- | -- | -- |
| 92.11 | 0.447 | 13.4 | -0.8 | -- | 1.28 | -- | -- | -0.558 | -- | 26.35 | 492 | -- | -- |
| 70.88 | 0.394 | 13.3 | -- | 1.3 | 0.453 | -- | -- | -0.227 | 19.7 | 27.13 | 7530 | -- | -- |
| 182.58 | 0.631 | 13.3 | -0.441 | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
| 83.8 | 0.428 | 13.3 | -- | 1.41 | -- | -- | -- | -0.159 | 18.8 | -- | -- | -- | -- |
| 108.27 | 0.485 | 13.3 | -- | -- | 1.16 | -- | -- | -0.447 | -- | 26.3 | 469 | -- | -- |
| 187.7 | 0.639 | 13.3 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 4 | 51.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 47 | 54.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 74 | 55.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 76 | 55.64 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 87 | 55.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 104 | 56.10 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 116 | 56.33 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 4 |
| 122 | 56.41 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 125 | 56.44 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 148 | 56.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 161 | 56.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 163 | 56.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 167 | 56.92 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 235 | 57.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 242 | 57.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 243 | 57.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 245 | 57.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 265 | 57.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 267 | 57.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 301 | 57.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 305 | 57.62 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 308 | 57.63 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 310 | 57.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 332 | 57.72 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 344 | 57.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 357 | 57.78 | temperature | 20.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 362 | 57.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 373 | 57.81 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 382 | 57.82 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 385 | 57.83 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 387 | 57.83 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 390 | 57.84 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 471 | 58.02 | temperature | 20.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 481 | 58.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 517 | 58.10 | temperature | 20.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 519 | 58.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 524 | 58.11 | temperature | 25.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 554 | 58.15 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 589 | 58.20 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 598 | 58.22 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 618 | 58.24 | temperature | 25.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 650 | 58.27 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 669 | 58.29 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 686 | 58.32 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 696 | 58.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 753 | 58.39 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 836 | 58.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 879 | 58.54 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 892 | 58.56 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 939 | 58.62 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 969 | 58.64 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 974 | 58.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |